Sequence Similarity Clusters for the Entities in PDB 1NDD

Entity #1 | Chains: A,B,C,D
PROTEIN (UBIQUITIN-LIKE PROTEIN NEDD8) protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 13 1830
95 % 2 17 1410 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.3
PDBFlex
90 % 2 17 1436
70 % 2 18 1383
50 % 69 481 11
40 % 70 505 15
30 % 183 1062 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures