Sequence Similarity Clusters for the Entities in PDB 1NDD

Entity #1 | Chains: A,B,C,D
PROTEIN (UBIQUITIN-LIKE PROTEIN NEDD8) protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 13 1722
95 % 2 17 1338 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.2
PDBFlex
90 % 2 17 1364
70 % 2 18 1327
50 % 64 451 12
40 % 65 475 16
30 % 175 1026 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.