Sequence Similarity Clusters for the Entities in PDB 1NDB

Entity #1 | Chains: A,B
Carnitine Acetyltransferase protein, length: 596 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 6047
95 % 2 9 3913 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 4 11 3479
70 % 4 11 3443
50 % 4 11 3352
40 % 5 17 2362
30 % 7 29 1247

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures