Sequence Similarity Clusters for the Entities in PDB 1ND3

Entity #1 | Chains: A
coat protein VP1 protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 7411
95 % 9 10 7157 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 9 10 7145
70 % 10 20 3244
50 % 10 20 3171
40 % 35 160 279
30 % 35 160 293
Entity #2 | Chains: B
coat protein VP2 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 7441
95 % 9 10 7206 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 9 10 7192
70 % 10 20 3262
50 % 34 160 338
40 % 34 160 353
30 % 47 195 169
Entity #3 | Chains: C
coat protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 10 6636
95 % 9 10 7261 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 9 10 7241
70 % 10 20 3275
50 % 35 169 247
40 % 35 171 262
30 % 49 210 153
Entity #4 | Chains: D
coat protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 74457
95 % 8 9 8377 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 9 13 5468
70 % 9 13 5373
50 % 30 122 452
40 % 31 123 477
30 % 31 123 470

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures