Sequence Similarity Clusters for the Entities in PDB 1ND3

Entity #1 | Chains: A
coat protein VP1 protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 6699
95 % 9 10 6490
90 % 9 10 6479
70 % 10 20 2969
50 % 10 20 2903
40 % 35 148 281
30 % 35 148 285
Entity #2 | Chains: B
coat protein VP2 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 6728
95 % 9 10 6536
90 % 9 10 6523
70 % 10 20 2984
50 % 34 150 299
40 % 34 150 316
30 % 45 178 170
Entity #3 | Chains: C
coat protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 10 5999
95 % 9 10 6585
90 % 9 10 6569
70 % 10 20 2994
50 % 24 114 430
40 % 35 159 262
30 % 47 189 152
Entity #4 | Chains: D
coat protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68817
95 % 8 9 7609
90 % 9 13 4930
70 % 9 13 4863
50 % 30 116 426
40 % 30 116 466
30 % 30 116 456

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.