Sequence Similarity Clusters for the Entities in PDB 1ND2

Entity #1 | Chains: A
coat protein VP1 protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 6716
95 % 2 10 6500
90 % 2 10 6489
70 % 3 20 2973
50 % 3 20 2905
40 % 12 148 281
30 % 12 148 285
Entity #2 | Chains: B
coat protein VP2 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 6744
95 % 2 10 6546
90 % 2 10 6533
70 % 3 20 2987
50 % 11 150 299
40 % 11 150 316
30 % 16 178 170
Entity #3 | Chains: C
coat protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 6011
95 % 2 10 6595
90 % 2 10 6579
70 % 3 20 2997
50 % 7 114 432
40 % 12 159 262
30 % 17 189 152
Entity #4 | Chains: D
coat protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 8 9354
95 % 2 9 7622
90 % 3 13 4938
70 % 3 13 4872
50 % 10 116 429
40 % 10 116 467
30 % 10 116 457

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.