Sequence Similarity Clusters for the Entities in PDB 1ND2

Entity #1 | Chains: A
coat protein VP1 protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 6524
95 % 2 10 6323
90 % 2 10 6321
70 % 3 20 2908
50 % 3 20 2841
40 % 12 147 270
30 % 12 147 275
Entity #2 | Chains: B
coat protein VP2 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 6550
95 % 2 10 6373
90 % 2 10 6368
70 % 3 20 2923
50 % 11 150 286
40 % 11 150 304
30 % 16 178 163
Entity #3 | Chains: C
coat protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 5837
95 % 2 10 6423
90 % 2 10 6416
70 % 3 20 2933
50 % 7 114 414
40 % 12 158 253
30 % 17 188 148
Entity #4 | Chains: D
coat protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 8 9135
95 % 2 9 7434
90 % 3 13 4812
70 % 3 13 4755
50 % 10 116 409
40 % 10 116 445
30 % 10 116 439

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.