Sequence Similarity Clusters for the Entities in PDB 1ND2

Entity #1 | Chains: A
coat protein VP1 protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 7124
95 % 2 10 6903 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 10 6884
70 % 3 20 3128
50 % 3 20 3061
40 % 12 159 276
30 % 12 159 285
Entity #2 | Chains: B
coat protein VP2 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 7153
95 % 2 10 6955 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 2 10 6934
70 % 3 20 3144
50 % 11 159 303
40 % 11 159 315
30 % 17 194 165
Entity #3 | Chains: C
coat protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 10 6389
95 % 2 10 7010 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 2 10 6984
70 % 3 20 3155
50 % 12 168 240
40 % 12 170 258
30 % 18 209 148
Entity #4 | Chains: D
coat protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 8 9895
95 % 2 9 8082
90 % 3 13 5252
70 % 3 13 5173
50 % 10 122 435
40 % 10 123 463
30 % 10 123 460

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.