Sequence Similarity Clusters for the Entities in PDB 1ND2

Entity #1 | Chains: A
coat protein VP1 protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 6574
95 % 2 10 6364
90 % 2 10 6358
70 % 3 20 2921
50 % 3 20 2856
40 % 12 148 273
30 % 12 148 275
Entity #2 | Chains: B
coat protein VP2 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 6601
95 % 2 10 6413
90 % 2 10 6404
70 % 3 20 2937
50 % 11 150 288
40 % 11 150 308
30 % 16 178 165
Entity #3 | Chains: C
coat protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 5880
95 % 2 10 6462
90 % 2 10 6451
70 % 3 20 2947
50 % 7 114 422
40 % 12 159 255
30 % 17 189 149
Entity #4 | Chains: D
coat protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 8 9203
95 % 2 9 7480
90 % 3 13 4841
70 % 3 13 4780
50 % 10 116 417
40 % 10 116 456
30 % 10 116 448

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.