Sequence Similarity Clusters for the Entities in PDB 1ND2

Entity #1 | Chains: A
coat protein VP1 protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 7027
95 % 2 10 6806
90 % 2 10 6789
70 % 3 20 3084
50 % 3 20 3022
40 % 12 155 276
30 % 12 155 284
Entity #2 | Chains: B
coat protein VP2 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 7056
95 % 2 10 6858
90 % 2 10 6839
70 % 3 20 3098
50 % 11 157 298
40 % 11 157 313
30 % 17 192 165
Entity #3 | Chains: C
coat protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 6298
95 % 2 10 6912
90 % 2 10 6889
70 % 3 20 3108
50 % 12 164 242
40 % 12 166 260
30 % 18 205 146
Entity #4 | Chains: D
coat protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 8 9746
95 % 2 9 7967
90 % 3 13 5146
70 % 3 13 5093
50 % 10 122 427
40 % 10 123 454
30 % 10 123 453

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.