Sequence Similarity Clusters for the Entities in PDB 1ND0

Entity #1 | Chains: A,C,E,G
IMMUNOGLOBULIN IGG2A protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 5584
95 % 43 51 676 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.9
PDBFlex
90 % 43 52 678
70 % 1351 2264 1
50 % 2750 4587 1
40 % 2750 4587 1
30 % 3171 5392 1
Entity #2 | Chains: B,D,F,H
IMMUNOGLOBULIN IGG2A protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 5581
95 % 8 8 6240 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 16 20 2087
70 % 1330 2222 2
50 % 2751 4587 1
40 % 2751 4587 1
30 % 3172 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.