Sequence Similarity Clusters for the Entities in PDB 1ND0

Entity #1 | Chains: A,C,E,G
IMMUNOGLOBULIN IGG2A protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 5861
95 % 43 52 677 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.8
PDBFlex
90 % 43 53 684
70 % 1459 2426 1
50 % 2966 4913 1
40 % 2966 4913 1
30 % 3418 5780 1
Entity #2 | Chains: B,D,F,H
IMMUNOGLOBULIN IGG2A protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 5859
95 % 8 8 6519 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 16 20 2194
70 % 1431 2376 2
50 % 2967 4913 1
40 % 2967 4913 1
30 % 3419 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures