Sequence Similarity Clusters for the Entities in PDB 1ND0

Entity #1 | Chains: A,C,E,G
IMMUNOGLOBULIN IGG2A protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 6544
95 % 41 50 718 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.9
PDBFlex
90 % 44 54 671
70 % 1526 2553 1
50 % 3110 5180 1
40 % 3541 5834 1
30 % 4365 7269 1
Entity #2 | Chains: B,D,F,H
IMMUNOGLOBULIN IGG2A protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 6545
95 % 8 8 6695 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 17 21 2121
70 % 1501 2511 2
50 % 3111 5180 1
40 % 3542 5834 1
30 % 4366 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures