Sequence Similarity Clusters for the Entities in PDB 1ND0

Entity #1 | Chains: A,C,E,G
IMMUNOGLOBULIN IGG2A protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 5950
95 % 43 52 680 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.8
PDBFlex
90 % 43 53 686
70 % 1490 2474 1
50 % 3029 5011 1
40 % 3029 5011 1
30 % 3533 5941 1
Entity #2 | Chains: B,D,F,H
IMMUNOGLOBULIN IGG2A protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 5948
95 % 8 8 6609 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 16 20 2228
70 % 1462 2424 2
50 % 3030 5011 1
40 % 3030 5011 1
30 % 3534 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures