Sequence Similarity Clusters for the Entities in PDB 1NCW

Entity #1 | Chains: L
IMMUNOGLOBULIN IGG2A protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 5727
95 % 1 51 687 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.8
PDBFlex
90 % 1 52 691
70 % 7 2327 1
50 % 14 4713 1
40 % 14 4713 1
30 % 14 5567 1
Entity #2 | Chains: H
IMMUNOGLOBULIN IGG2A protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 5725
95 % 1 8 6390 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 1 20 2130
70 % 7 2280 2
50 % 15 4713 1
40 % 15 4713 1
30 % 15 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.