Sequence Similarity Clusters for the Entities in PDB 1NCR

Entity #1 | Chains: A
coat protein VP1 protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 6642
95 % 6 10 6428
90 % 6 10 6421
70 % 7 20 2943
50 % 7 20 2878
40 % 30 148 277
30 % 30 148 280
Entity #2 | Chains: B
coat protein VP2 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 6670
95 % 6 10 6475
90 % 6 10 6465
70 % 7 20 2959
50 % 29 150 293
40 % 29 150 312
30 % 38 178 168
Entity #3 | Chains: C
coat protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 10 5940
95 % 6 10 6524
90 % 6 10 6511
70 % 7 20 2969
50 % 20 114 427
40 % 30 159 258
30 % 39 189 151
Entity #4 | Chains: D
coat protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 9274
95 % 6 9 7544
90 % 7 13 4891
70 % 7 13 4830
50 % 27 116 422
40 % 27 116 459
30 % 27 116 451

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.