Sequence Similarity Clusters for the Entities in PDB 1NCR

Entity #1 | Chains: A
coat protein VP1 protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 6453
95 % 6 10 6260
90 % 6 10 6260
70 % 7 20 2870
50 % 7 20 2804
40 % 30 147 268
30 % 30 147 273
Entity #2 | Chains: B
coat protein VP2 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 6477
95 % 6 10 6307
90 % 6 10 6304
70 % 7 20 2887
50 % 29 150 280
40 % 29 150 299
30 % 38 178 162
Entity #3 | Chains: C
coat protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 10 5776
95 % 6 10 6355
90 % 6 10 6350
70 % 7 20 2896
50 % 20 114 398
40 % 30 158 251
30 % 39 187 148
Entity #4 | Chains: D
coat protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 9040
95 % 6 9 7361
90 % 7 13 4764
70 % 7 13 4710
50 % 27 116 386
40 % 27 116 425
30 % 27 116 417

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.