Sequence Similarity Clusters for the Entities in PDB 1NCR

Entity #1 | Chains: A
coat protein VP1 protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 6568
95 % 6 10 6358
90 % 6 10 6354
70 % 7 20 2920
50 % 7 20 2855
40 % 30 148 272
30 % 30 148 274
Entity #2 | Chains: B
coat protein VP2 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 6595
95 % 6 10 6407
90 % 6 10 6400
70 % 7 20 2936
50 % 29 150 288
40 % 29 150 307
30 % 38 178 165
Entity #3 | Chains: C
coat protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 10 5873
95 % 6 10 6456
90 % 6 10 6447
70 % 7 20 2946
50 % 20 114 422
40 % 30 159 254
30 % 39 189 149
Entity #4 | Chains: D
coat protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 9184
95 % 6 9 7478
90 % 7 13 4837
70 % 7 13 4776
50 % 27 116 417
40 % 27 116 456
30 % 27 116 448

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.