Sequence Similarity Clusters for the Entities in PDB 1NCQ

Entity #1 | Chains: A
COAT PROTEIN VP1 protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 26 1661
95 % 1 36 1467 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 1 36 1496
70 % 1 37 1438
50 % 1 37 1498
40 % 16 155 276
30 % 16 155 284
Entity #2 | Chains: B
COAT PROTEIN VP2 protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 28 1518
95 % 1 35 1528 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.1
PDBFlex
90 % 1 36 1501
70 % 1 37 1439
50 % 15 157 295
40 % 15 157 309
30 % 21 192 180
Entity #3 | Chains: C
COAT PROTEIN VP3 protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 36 1089
95 % 1 36 1476 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 1 36 1505
70 % 1 37 1441
50 % 16 164 241
40 % 16 166 258
30 % 22 203 157
Entity #4 | Chains: D
COAT PROTEIN VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 35 1139
95 % 1 36 1502 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 1 36 1533
70 % 6 87 551
50 % 14 122 421
40 % 14 123 446
30 % 14 123 446

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.