Sequence Similarity Clusters for the Entities in PDB 1NCQ

Entity #1 | Chains: A
COAT PROTEIN VP1 protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 26 1727
95 % 1 36 1518 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 1 36 1553
70 % 1 37 1488
50 % 1 37 1546
40 % 16 160 277
30 % 16 160 287
Entity #2 | Chains: B
COAT PROTEIN VP2 protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 28 1578
95 % 1 35 1584
90 % 1 36 1559
70 % 1 37 1490
50 % 15 160 315
40 % 15 160 329
30 % 21 195 167
Entity #3 | Chains: C
COAT PROTEIN VP3 protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 36 1139
95 % 1 36 1530 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 1 36 1565
70 % 1 37 1492
50 % 16 169 244
40 % 16 171 260
30 % 22 210 149
Entity #4 | Chains: D
COAT PROTEIN VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 35 1195
95 % 1 36 1556 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.1
PDBFlex
90 % 1 36 1592
70 % 6 87 576
50 % 14 122 441
40 % 14 123 466
30 % 14 123 462

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures