Sequence Similarity Clusters for the Entities in PDB 1NCQ

Entity #1 | Chains: A
COAT PROTEIN VP1 protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 26 1680
95 % 1 36 1486 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 1 36 1516
70 % 1 37 1455
50 % 1 37 1513
40 % 16 158 274
30 % 16 158 282
Entity #2 | Chains: B
COAT PROTEIN VP2 protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 28 1533
95 % 1 35 1552 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 1 36 1522
70 % 1 37 1456
50 % 15 159 294
40 % 15 159 310
30 % 21 194 165
Entity #3 | Chains: C
COAT PROTEIN VP3 protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 36 1102
95 % 1 36 1499
90 % 1 36 1529
70 % 1 37 1458
50 % 16 167 239
40 % 16 169 255
30 % 22 208 146
Entity #4 | Chains: D
COAT PROTEIN VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 35 1154
95 % 1 36 1527 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 1 36 1557
70 % 6 87 558
50 % 14 122 428
40 % 14 123 455
30 % 14 123 454

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.