Sequence Similarity Clusters for the Entities in PDB 1NCD

Entity #1 | Chains: N
INFLUENZA A SUBTYPE N9 NEURAMINIDASE protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50103
95 % 39 44 990
90 % 50 55 811
70 % 58 63 484
50 % 122 143 172
40 % 122 143 185
30 % 142 166 142
Entity #2 | Chains: L
IGG2A-KAPPA NC41 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 19812
95 % 4 4 17249
90 % 36 64 420
70 % 931 1752 2
50 % 2275 4272 1
40 % 2275 4272 1
30 % 2599 5038 1
Entity #3 | Chains: H
IGG2A-KAPPA NC41 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 37591
95 % 4 4 17080
90 % 8 12 4423
70 % 1106 2066 1
50 % 2276 4272 1
40 % 2276 4272 1
30 % 2600 5038 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.