Sequence Similarity Clusters for the Entities in PDB 1NCD

Entity #1 | Chains: N
INFLUENZA A SUBTYPE N9 NEURAMINIDASE protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52755
95 % 39 44 1053
90 % 54 59 803
70 % 62 67 499
50 % 126 147 178
40 % 126 147 195
30 % 146 170 145
Entity #2 | Chains: L
IGG2A-KAPPA NC41 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 20989
95 % 4 4 18264
90 % 38 68 419
70 % 1188 2280 1
50 % 2430 4619 1
40 % 2430 4619 1
30 % 2785 5440 1
Entity #3 | Chains: H
IGG2A-KAPPA NC41 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 39620
95 % 4 4 18089
90 % 8 14 3539
70 % 1182 2238 2
50 % 2431 4619 1
40 % 2431 4619 1
30 % 2786 5440 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.