Sequence Similarity Clusters for the Entities in PDB 1NCD

Entity #1 | Chains: N
INFLUENZA A SUBTYPE N9 NEURAMINIDASE protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54521
95 % 39 44 1090 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 54 59 827
70 % 62 67 551
50 % 126 147 187
40 % 126 147 202
30 % 146 170 152
Entity #2 | Chains: L
IGG2A-KAPPA NC41 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 21789
95 % 4 4 18887 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 39 76 396
70 % 1270 2416 1
50 % 2594 4892 1
40 % 2594 4892 1
30 % 2970 5759 1
Entity #3 | Chains: H
IGG2A-KAPPA NC41 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41011
95 % 4 4 18706 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 8 14 3684
70 % 1259 2366 2
50 % 2595 4892 1
40 % 2595 4892 1
30 % 2971 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures