Sequence Similarity Clusters for the Entities in PDB 1NCD

Entity #1 | Chains: N
INFLUENZA A SUBTYPE N9 NEURAMINIDASE protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50414
95 % 39 44 1011
90 % 50 55 838
70 % 58 63 492
50 % 122 143 173
40 % 122 143 187
30 % 142 166 143
Entity #2 | Chains: L
IGG2A-KAPPA NC41 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 19952
95 % 4 4 17361
90 % 37 65 419
70 % 940 1765 2
50 % 2322 4337 1
40 % 2322 4337 1
30 % 2650 5109 1
Entity #3 | Chains: H
IGG2A-KAPPA NC41 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 37814
95 % 4 4 17193
90 % 8 12 4463
70 % 1128 2096 1
50 % 2323 4337 1
40 % 2323 4337 1
30 % 2651 5109 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.