Sequence Similarity Clusters for the Entities in PDB 1NCC

Entity #1 | Chains: N
INFLUENZA A SUBTYPE N9 NEURAMINIDASE protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 32046
95 % 38 44 1018
90 % 49 55 844
70 % 57 63 501
50 % 121 143 174
40 % 121 143 189
30 % 141 166 144
Entity #2 | Chains: L
IGG2A-KAPPA NC41 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 20118
95 % 3 4 17512
90 % 36 66 414
70 % 942 1775 2
50 % 2328 4367 1
40 % 2328 4367 1
30 % 2664 5151 1
Entity #3 | Chains: H
IGG2A-KAPPA NC41 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 38142
95 % 3 4 17342
90 % 7 12 4500
70 % 1131 2111 1
50 % 2329 4367 1
40 % 2329 4367 1
30 % 2665 5151 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.