Sequence Similarity Clusters for the Entities in PDB 1NCC

Entity #1 | Chains: N
INFLUENZA A SUBTYPE N9 NEURAMINIDASE protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 33365
95 % 38 44 1053
90 % 53 59 803
70 % 61 67 499
50 % 125 147 178
40 % 125 147 195
30 % 145 170 145
Entity #2 | Chains: L
IGG2A-KAPPA NC41 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 20989
95 % 3 4 18264
90 % 37 68 419
70 % 1187 2280 1
50 % 2428 4619 1
40 % 2428 4619 1
30 % 2783 5440 1
Entity #3 | Chains: H
IGG2A-KAPPA NC41 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 39619
95 % 3 4 18089
90 % 7 14 3539
70 % 1181 2238 2
50 % 2429 4619 1
40 % 2429 4619 1
30 % 2784 5440 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.