Sequence Similarity Clusters for the Entities in PDB 1NCB

Entity #1 | Chains: N
INFLUENZA A SUBTYPE N9 NEURAMINIDASE protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 34625
95 % 36 48 999 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 50 63 768
70 % 58 71 525
50 % 106 151 186
40 % 106 151 200
30 % 120 174 150
Entity #2 | Chains: L
IGG2A-KAPPA NC41 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 21826
95 % 1 4 18917 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 25 76 399
70 % 939 2426 1
50 % 1921 4913 1
40 % 1921 4913 1
30 % 2168 5780 1
Entity #3 | Chains: H
IGG2A-KAPPA NC41 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41068
95 % 1 4 18736 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 3 14 3693
70 % 927 2376 2
50 % 1922 4913 1
40 % 1922 4913 1
30 % 2169 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures