Sequence Similarity Clusters for the Entities in PDB 1NCB

Entity #1 | Chains: N
INFLUENZA A SUBTYPE N9 NEURAMINIDASE protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 33865
95 % 32 44 1070 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 46 59 811
70 % 54 67 515
50 % 102 147 182
40 % 102 147 199
30 % 116 170 150
Entity #2 | Chains: L
IGG2A-KAPPA NC41 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 21299
95 % 1 4 18515 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 24 73 395
70 % 891 2329 1
50 % 1823 4717 1
40 % 1823 4717 1
30 % 2060 5571 1
Entity #3 | Chains: H
IGG2A-KAPPA NC41 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40189
95 % 1 4 18339 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 3 14 3595
70 % 880 2282 2
50 % 1824 4717 1
40 % 1824 4717 1
30 % 2061 5571 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.