Sequence Similarity Clusters for the Entities in PDB 1NCA

Entity #1 | Chains: N
INFLUENZA A SUBTYPE N9 NEURAMINIDASE protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 24 1642
95 % 34 44 1018
90 % 45 55 844
70 % 53 63 501
50 % 112 143 174
40 % 112 143 189
30 % 129 166 144
Entity #2 | Chains: L
IGG2A-KAPPA NC41 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 20118
95 % 2 4 17512
90 % 31 66 414
70 % 824 1775 2
50 % 2050 4367 1
40 % 2050 4367 1
30 % 2322 5151 1
Entity #3 | Chains: H
IGG2A-KAPPA NC41 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 38142
95 % 2 4 17342
90 % 5 12 4500
70 % 994 2111 1
50 % 2051 4367 1
40 % 2051 4367 1
30 % 2323 5151 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.