Sequence Similarity Clusters for the Entities in PDB 1NCA

Entity #1 | Chains: N
INFLUENZA A SUBTYPE N9 NEURAMINIDASE protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 24 1740
95 % 34 44 1059 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 48 59 804
70 % 56 67 501
50 % 115 147 178
40 % 115 147 196
30 % 132 170 148
Entity #2 | Chains: L
IGG2A-KAPPA NC41 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 21125
95 % 2 4 18376 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 31 69 407
70 % 1050 2287 1
50 % 2146 4633 1
40 % 2146 4633 1
30 % 2434 5461 1
Entity #3 | Chains: H
IGG2A-KAPPA NC41 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39887
95 % 2 4 18202 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 5 14 3562
70 % 1042 2244 2
50 % 2147 4633 1
40 % 2147 4633 1
30 % 2435 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.