Sequence Similarity Clusters for the Entities in PDB 1NCA

Entity #1 | Chains: N
INFLUENZA A SUBTYPE N9 NEURAMINIDASE protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 24 1719
95 % 34 44 1050 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 48 59 801
70 % 56 67 494
50 % 115 147 176
40 % 115 147 191
30 % 132 170 144
Entity #2 | Chains: L
IGG2A-KAPPA NC41 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 20754
95 % 2 4 18041 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 31 68 416
70 % 1039 2264 1
50 % 2124 4587 1
40 % 2124 4587 1
30 % 2403 5392 1
Entity #3 | Chains: H
IGG2A-KAPPA NC41 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39254
95 % 2 4 17867 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 5 14 3515
70 % 1031 2222 2
50 % 2125 4587 1
40 % 2125 4587 1
30 % 2404 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.