Sequence Similarity Clusters for the Entities in PDB 1NC4

Entity #1 | Chains: A,C
MONOCLONAL ANTIBODY 2D12.5, LAMBDA LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21322
95 % 13 39 457 Flexibility: Low
Max RMSD: 8.7, Avg RMSD: 2.3
PDBFlex
90 % 15 45 398
70 % 893 2346 1
50 % 1826 4752 1
40 % 1826 4752 1
30 % 2060 5606 1
Entity #2 | Chains: B
MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 40327
95 % 3 4 18385
90 % 7 11 4480
70 % 881 2299 2
50 % 1827 4752 1
40 % 1827 4752 1
30 % 2061 5606 1
Entity #3 | Chains: D
MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40328
95 % 4 4 18385 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 8 11 4480
70 % 882 2299 2
50 % 1828 4752 1
40 % 1828 4752 1
30 % 2062 5606 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1NC2 2 B MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN Fab 10090
2 1NC2 3 D MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN Fab 10090
3 1NC4 2 B MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN Fab 10090
4 1NC4 3 D MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN Fab 10090