Sequence Similarity Clusters for the Entities in PDB 1NC4

Entity #1 | Chains: A,C
MONOCLONAL ANTIBODY 2D12.5, LAMBDA LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 7016
95 % 13 39 504 Flexibility: Low
Max RMSD: 8.7, Avg RMSD: 2.3
PDBFlex
90 % 15 45 467
70 % 962 2516 1
50 % 1968 5101 1
40 % 2268 5750 1
30 % 2767 7168 1
Entity #2 | Chains: B
MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 23828
95 % 3 4 21175
90 % 7 11 4793
70 % 952 2475 2
50 % 1969 5101 1
40 % 2269 5750 1
30 % 2768 7168 1
Entity #3 | Chains: D
MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 23828
95 % 4 4 21175 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 8 11 4793
70 % 953 2475 2
50 % 1970 5101 1
40 % 2270 5750 1
30 % 2769 7168 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1T2Q 2 H Fab NNA7 Light Chain 10090
2 4M7J 1 H S25-26 Fab (IgG1k) heavy chain 10090
3 2D03 2 H anti-glycophorin A type N immunoglobulin heavy chain 10090
4 1NC2 2 B MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN Fab 10090
5 1NC2 3 D MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN Fab 10090
6 4M93 2 B, H S25-26 Fab (IgG1k) heavy chain 10090
7 1NC4 2 B MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN Fab 10090
8 1NC4 3 D MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN Fab 10090
9 4MA1 1 B, E, H S25-26 Fab (IgG1k) heavy chain 10090
10 4M7Z 1 B, H S25-26 Fab (Igg1k) Heavy Chain 10090
11 3RAJ 2 H heavy chain of the Fab fragment of antibody HB7 10090