Sequence Similarity Clusters for the Entities in PDB 1NC4

Entity #1 | Chains: A,C
MONOCLONAL ANTIBODY 2D12.5, LAMBDA LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21785
95 % 13 39 492 Flexibility: Low
Max RMSD: 8.7, Avg RMSD: 2.3
PDBFlex
90 % 15 45 441
70 % 930 2426 1
50 % 1901 4913 1
40 % 1901 4913 1
30 % 2145 5780 1
Entity #2 | Chains: B
MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 41065
95 % 3 4 18735
90 % 7 11 4561
70 % 917 2376 2
50 % 1902 4913 1
40 % 1902 4913 1
30 % 2146 5780 1
Entity #3 | Chains: D
MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41066
95 % 4 4 18735 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 8 11 4561
70 % 918 2376 2
50 % 1903 4913 1
40 % 1903 4913 1
30 % 2147 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1T2Q 2 H Fab NNA7 Light Chain 10090
2 4M7J 1 H S25-26 Fab (IgG1k) heavy chain 10090
3 2D03 2 H anti-glycophorin A type N immunoglobulin heavy chain 10090
4 1NC2 2 B MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN Fab 10090
5 1NC2 3 D MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN Fab 10090
6 4M93 2 B, H S25-26 Fab (IgG1k) heavy chain 10090
7 1NC4 2 B MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN Fab 10090
8 1NC4 3 D MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN Fab 10090
9 4MA1 1 B, E, H S25-26 Fab (IgG1k) heavy chain 10090
10 4M7Z 1 B, H S25-26 Fab (Igg1k) Heavy Chain 10090
11 3RAJ 2 H heavy chain of the Fab fragment of antibody HB7 10090