Sequence Similarity Clusters for the Entities in PDB 1NC4

Entity #1 | Chains: A,C
MONOCLONAL ANTIBODY 2D12.5, LAMBDA LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 7864
95 % 13 39 542 Flexibility: Low
Max RMSD: 8.9, Avg RMSD: 2.4
PDBFlex
90 % 15 45 493
70 % 1018 2670 1
50 % 2089 5421 1
40 % 2403 6121 1
30 % 2916 7588 1
Entity #2 | Chains: B
MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 24936
95 % 3 4 22189 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 7 11 5018
70 % 1009 2629 2
50 % 2090 5421 1
40 % 2404 6121 1
30 % 2917 7588 1
Entity #3 | Chains: D
MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 24936
95 % 4 4 22189 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 8 11 5018
70 % 1010 2629 2
50 % 2091 5421 1
40 % 2405 6121 1
30 % 2918 7588 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1T2Q 2 H Fab NNA7 Light Chain 10090
2 4M7J 1 H S25-26 Fab (IgG1k) heavy chain 10090
3 2D03 2 H anti-glycophorin A type N immunoglobulin heavy chain 10090
4 1NC2 2 B MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN Fab 10090
5 1NC2 3 D MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN Fab 10090
6 4M93 2 B, H S25-26 Fab (IgG1k) heavy chain 10090
7 1NC4 2 B MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN Fab 10090
8 1NC4 3 D MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN Fab 10090
9 4MA1 1 B, E, H S25-26 Fab (IgG1k) heavy chain 10090
10 4M7Z 1 B, H S25-26 Fab (Igg1k) Heavy Chain 10090
11 3RAJ 2 H heavy chain of the Fab fragment of antibody HB7 10090