Sequence Similarity Clusters for the Entities in PDB 1NC4

Entity #1 | Chains: A,C
MONOCLONAL ANTIBODY 2D12.5, LAMBDA LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 7776
95 % 13 39 540 Flexibility: Low
Max RMSD: 8.9, Avg RMSD: 2.4
PDBFlex
90 % 15 45 490
70 % 1008 2634 1
50 % 2068 5348 1
40 % 2378 6031 1
30 % 2891 7494 1
Entity #2 | Chains: B
MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 24732
95 % 3 4 22002 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 7 11 4972
70 % 999 2593 2
50 % 2069 5348 1
40 % 2379 6031 1
30 % 2892 7494 1
Entity #3 | Chains: D
MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 24732
95 % 4 4 22002 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 8 11 4972
70 % 1000 2593 2
50 % 2070 5348 1
40 % 2380 6031 1
30 % 2893 7494 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1NC2 2 B MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN Fab 10090
2 1NC2 3 D MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN Fab 10090
3 1NC4 2 B MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN Fab 10090
4 1NC4 3 D MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN Fab 10090