Sequence Similarity Clusters for the Entities in PDB 1NC4

Entity #1 | Chains: A,C
MONOCLONAL ANTIBODY 2D12.5, LAMBDA LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 7648
95 % 13 44 403 Flexibility: Low
Max RMSD: 8.9, Avg RMSD: 2.4
PDBFlex
90 % 15 50 365
70 % 1034 2723 1
50 % 2123 5529 1
40 % 2443 6248 1
30 % 2966 7755 1
Entity #2 | Chains: B
MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 25252
95 % 3 4 22452 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 11 15 3657
70 % 1026 2682 2
50 % 2124 5529 1
40 % 2444 6248 1
30 % 2967 7755 1
Entity #3 | Chains: D
MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 25252
95 % 4 4 22452 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 12 15 3657
70 % 1027 2682 2
50 % 2125 5529 1
40 % 2445 6248 1
30 % 2968 7755 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1NC2 1 A, C MONOCLONAL ANTIBODY 2D12.5, LAMBDA LIGHT CHAIN Fab 10090
2 1GIG 1 L IGG1-KAPPA HC19 FAB (LIGHT CHAIN) 10090
3 1NC4 1 A, C MONOCLONAL ANTIBODY 2D12.5, LAMBDA LIGHT CHAIN Fab 10090
4 1NGQ 1 L N1G9 (IGG1-LAMBDA) FAB FRAGMENT 10090
5 1NGP 1 L N1G9 (IGG1-LAMBDA) FAB FRAGMENT 10090
6 2VIS 1 A IMMUNOGLOBULIN (IGG1, LAMBDA) FAB FRAGMENT 10090
7 2VIT 1 A IMMUNOGLOBULIN (IGG1, LAMBDA) FAB FRAGMENT 10090
8 2VIR 1 A IMMUNOGLOBULIN (IGG1, LAMBDA) FAB FRAGMENT 10090