Sequence Similarity Clusters for the Entities in PDB 1NC4

Entity #1 | Chains: A,C
MONOCLONAL ANTIBODY 2D12.5, LAMBDA LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 7805
95 % 13 44 424 Flexibility: Low
Max RMSD: 8.9, Avg RMSD: 2.4
PDBFlex
90 % 15 50 397
70 % 1041 2765 1
50 % 2148 5625 1
40 % 2472 6382 1
30 % 3003 7934 1
Entity #2 | Chains: B
MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 25649
95 % 3 4 22800 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 11 15 3737
70 % 1037 2728 2
50 % 2149 5625 1
40 % 2473 6382 1
30 % 3004 7934 1
Entity #3 | Chains: D
MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 25649
95 % 4 4 22800 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 12 15 3737
70 % 1038 2728 2
50 % 2150 5625 1
40 % 2474 6382 1
30 % 3005 7934 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1NC2 1 A, C MONOCLONAL ANTIBODY 2D12.5, LAMBDA LIGHT CHAIN Fab 10090
2 1GIG 1 L IGG1-KAPPA HC19 FAB (LIGHT CHAIN) 10090
3 1NC4 1 A, C MONOCLONAL ANTIBODY 2D12.5, LAMBDA LIGHT CHAIN Fab 10090
4 1NGQ 1 L N1G9 (IGG1-LAMBDA) FAB FRAGMENT 10090
5 1NGP 1 L N1G9 (IGG1-LAMBDA) FAB FRAGMENT 10090
6 2VIS 1 A IMMUNOGLOBULIN (IGG1, LAMBDA) FAB FRAGMENT 10090
7 2VIT 1 A IMMUNOGLOBULIN (IGG1, LAMBDA) FAB FRAGMENT 10090
8 2VIR 1 A IMMUNOGLOBULIN (IGG1, LAMBDA) FAB FRAGMENT 10090