Sequence Similarity Clusters for the Entities in PDB 1NC4

Entity #1 | Chains: A,C
MONOCLONAL ANTIBODY 2D12.5, LAMBDA LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22421
95 % 13 44 420 Flexibility: Low
Max RMSD: 8.9, Avg RMSD: 2.4
PDBFlex
90 % 15 50 388
70 % 15 51 423
50 % 1071 2821 2
40 % 1071 2821 2
30 % 2188 5715 1
Entity #2 | Chains: B
MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 52825
95 % 3 4 20066 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 11 15 3752
70 % 1043 2735 1
50 % 1103 2852 1
40 % 1103 2852 1
30 % 2189 5715 1
Entity #3 | Chains: D
MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 42789
95 % 4 4 20066 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 12 15 3752
70 % 1044 2735 1
50 % 1104 2852 1
40 % 1104 2852 1
30 % 2190 5715 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures