Sequence Similarity Clusters for the Entities in PDB 1NC2

Entity #1 | Chains: A,C
MONOCLONAL ANTIBODY 2D12.5, LAMBDA LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20562
95 % 7 39 429 Flexibility: Low
Max RMSD: 8.9, Avg RMSD: 2.3
PDBFlex
90 % 9 45 384
70 % 123 398 10
50 % 1384 4537 1
40 % 1384 4537 1
30 % 1549 5342 1
Entity #2 | Chains: B
MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 38977
95 % 1 4 17737 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 4 11 4313
70 % 667 2197 1
50 % 1385 4537 1
40 % 1385 4537 1
30 % 1550 5342 1
Entity #3 | Chains: D
MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 38978
95 % 2 4 17737 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 5 11 4313
70 % 668 2197 1
50 % 1386 4537 1
40 % 1386 4537 1
30 % 1551 5342 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.