Sequence Similarity Clusters for the Entities in PDB 1NBZ

Entity #1 | Chains: A
antibody kappa light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 12 4538
95 % 10 31 1388 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 12 39 1076
70 % 530 2474 1
50 % 1092 5011 1
40 % 1092 5011 1
30 % 1232 5941 1
Entity #2 | Chains: B
immunoglobulin gamma 1 chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 13492
95 % 3 11 6042 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 4 12 5371
70 % 529 2424 2
50 % 1093 5011 1
40 % 1093 5011 1
30 % 1233 5941 1
Entity #3 | Chains: C
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68886
95 % 548 721 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 557 738 5
70 % 752 961 7
50 % 756 969 8
40 % 768 1003 11
30 % 768 1003 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures