Sequence Similarity Clusters for the Entities in PDB 1NBY

Entity #1 | Chains: A
antibody kappa light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 12 4374
95 % 5 29 1620 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 7 37 1187
70 % 338 2362 1
50 % 693 4781 1
40 % 693 4781 1
30 % 752 5635 1
Entity #2 | Chains: B
immunoglobulin gamma 1 chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 13047
95 % 2 11 5865 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 2 12 5190
70 % 337 2311 2
50 % 694 4781 1
40 % 694 4781 1
30 % 753 5635 1
Entity #3 | Chains: C
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67111
95 % 475 716 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 484 733 5
70 % 663 953 7
50 % 666 961 8
40 % 676 995 11
30 % 676 995 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures