Sequence Similarity Clusters for the Entities in PDB 1NBY

Entity #1 | Chains: A
antibody kappa light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 14 4387
95 % 5 31 1422 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 7 39 1085
70 % 373 2516 1
50 % 764 5101 1
40 % 931 5750 1
30 % 1146 7168 1
Entity #2 | Chains: B
immunoglobulin gamma 1 chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 7432
95 % 2 11 6227 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 2 12 5348
70 % 373 2475 2
50 % 765 5101 1
40 % 932 5750 1
30 % 1147 7168 1
Entity #3 | Chains: C
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 475 717 3
95 % 490 734 3 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 499 751 5
70 % 679 974 7
50 % 682 982 8
40 % 692 1016 10
30 % 692 1016 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures