Sequence Similarity Clusters for the Entities in PDB 1NBY

Entity #1 | Chains: A
antibody kappa light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 12 4114
95 % 5 25 1809 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.6
PDBFlex
90 % 7 33 1273
70 % 260 1822 2
50 % 644 4489 1
40 % 644 4489 1
30 % 698 5290 1
Entity #2 | Chains: B
immunoglobulin gamma 1 chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 12477
95 % 2 11 5565 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 2 12 4913
70 % 314 2172 1
50 % 645 4489 1
40 % 645 4489 1
30 % 699 5290 1
Entity #3 | Chains: C
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 64430
95 % 458 693 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 467 710 5
70 % 643 927 7
50 % 646 935 7
40 % 656 969 11
30 % 656 969 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.