Sequence Similarity Clusters for the Entities in PDB 1NBV

Entity #1 | Chains: L
IGG2B-KAPPA BV04-01 FAB (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39126
95 % 65 145 147 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 71 155 149
70 % 611 1841 2
50 % 1531 4537 1
40 % 1531 4537 1
30 % 1712 5342 1
Entity #2 | Chains: H
IGG2B-KAPPA BV04-01 FAB (HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 39125
95 % 1 2 29957
90 % 5 8 7490
70 % 739 2197 1
50 % 1532 4537 1
40 % 1532 4537 1
30 % 1713 5342 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.