Sequence Similarity Clusters for the Entities in PDB 1NBV

Entity #1 | Chains: L
IGG2B-KAPPA BV04-01 FAB (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41718
95 % 65 148 151 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 71 158 148
70 % 840 2474 1
50 % 1719 5011 1
40 % 1719 5011 1
30 % 1961 5941 1
Entity #2 | Chains: H
IGG2B-KAPPA BV04-01 FAB (HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41717
95 % 1 2 31859 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 2.0
PDBFlex
90 % 5 8 8008
70 % 830 2424 2
50 % 1720 5011 1
40 % 1720 5011 1
30 % 1962 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures