Sequence Similarity Clusters for the Entities in PDB 1NBV

Entity #1 | Chains: L
IGG2B-KAPPA BV04-01 FAB (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40301
95 % 65 146 145 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 71 156 146
70 % 775 2327 1
50 % 1586 4713 1
40 % 1586 4713 1
30 % 1782 5567 1
Entity #2 | Chains: H
IGG2B-KAPPA BV04-01 FAB (HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40300
95 % 1 2 30838 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 2.0
PDBFlex
90 % 5 8 7732
70 % 765 2280 2
50 % 1587 4713 1
40 % 1587 4713 1
30 % 1783 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.