Sequence Similarity Clusters for the Entities in PDB 1NBU

Entity #1 | Chains: A,E,F,G,H
Probable dihydroneopterin aldolase protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 16128
95 % 1 3 9899 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 3 9778
70 % 1 3 9312
50 % 1 3 8429
40 % 1 3 7728
30 % 3 19 1661
Entity #2 | Chains: B,D
Probable dihydroneopterin aldolase protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46653
95 % 2 3 9899 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 3 9778
70 % 2 3 9312
50 % 2 3 8429
40 % 2 3 7728
30 % 4 19 1661
Entity #3 | Chains: C
Probable dihydroneopterin aldolase protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68637
95 % 3 3 9899 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 3 3 9778
70 % 3 3 9312
50 % 3 3 8429
40 % 3 3 7728
30 % 5 19 1661

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures