Sequence Similarity Clusters for the Entities in PDB 1NBQ

Entity #1 | Chains: A,B
Junctional adhesion molecule 1 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41777
95 % 1 1 31751 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 30375
70 % 1 1 27136
50 % 2 2 17936
40 % 2 2 15987
30 % 2 2 13672

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures