Sequence Similarity Clusters for the Entities in PDB 1NBQ

Entity #1 | Chains: A,B
Junctional adhesion molecule 1 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40983
95 % 1 1 31177 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 29839
70 % 1 1 26695
50 % 2 2 17645
40 % 2 2 15735
30 % 2 2 13452

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.