Sequence Similarity Clusters for the Entities in PDB 1NBM

Entity #1 | Chains: A,B,C
F1-ATPASE protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 29 295
95 % 15 41 274 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 15 41 285
70 % 19 59 166
50 % 22 71 166
40 % 22 71 182
30 % 22 71 197
Entity #2 | Chains: D,F
F1-ATPASE protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 40 203
95 % 15 42 275 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.0
PDBFlex
90 % 15 42 286
70 % 22 72 138
50 % 22 72 167
40 % 22 72 183
30 % 22 72 198
Entity #3 | Chains: E
F1-ATPASE protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 40 203
95 % 16 42 275 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.0
PDBFlex
90 % 16 42 286
70 % 23 72 138
50 % 23 72 167
40 % 23 72 183
30 % 23 72 198
Entity #4 | Chains: G
F1-ATPASE protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 39 867
95 % 14 39 1176 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.4
PDBFlex
90 % 14 39 1204
70 % 15 41 1178
50 % 15 41 1236
40 % 20 65 622
30 % 20 65 615

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.