Sequence Similarity Clusters for the Entities in PDB 1NBM

Entity #1 | Chains: A,B,C
F1-ATPASE protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 29 259
95 % 15 41 255
90 % 15 41 263
70 % 19 59 158
50 % 22 71 155
40 % 22 71 172
30 % 22 71 188
Entity #2 | Chains: D,F
F1-ATPASE protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 40 188
95 % 15 42 256
90 % 15 42 264
70 % 22 72 127
50 % 22 72 156
40 % 22 72 173
30 % 22 72 189
Entity #3 | Chains: E
F1-ATPASE protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 40 188
95 % 16 42 256
90 % 16 42 264
70 % 23 72 127
50 % 23 72 156
40 % 23 72 173
30 % 23 72 189
Entity #4 | Chains: G
F1-ATPASE protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 39 809
95 % 14 39 1111
90 % 14 39 1135
70 % 15 41 1119
50 % 15 41 1172
40 % 20 65 588
30 % 20 65 585

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.