Sequence Similarity Clusters for the Entities in PDB 1NBM

Entity #1 | Chains: A,B,C
F1-ATPASE protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 29 249
95 % 15 41 243
90 % 15 41 252
70 % 19 56 156
50 % 22 65 161
40 % 22 65 176
30 % 22 65 190
Entity #2 | Chains: D,F
F1-ATPASE protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 40 180
95 % 15 42 244
90 % 15 42 253
70 % 22 66 135
50 % 22 66 162
40 % 22 66 177
30 % 22 66 191
Entity #3 | Chains: E
F1-ATPASE protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 40 180
95 % 16 42 244
90 % 16 42 253
70 % 23 66 135
50 % 23 66 162
40 % 23 66 177
30 % 23 66 191
Entity #4 | Chains: G
F1-ATPASE protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 39 772
95 % 14 39 1071
90 % 14 39 1093
70 % 15 41 1085
50 % 15 41 1133
40 % 20 59 591
30 % 20 59 599

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.