Sequence Similarity Clusters for the Entities in PDB 1NBM

Entity #1 | Chains: A,B,C
F1-ATPASE protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 29 246
95 % 15 41 221
90 % 15 41 232
70 % 19 55 155
50 % 20 62 166
40 % 20 62 181
30 % 20 62 194
Entity #2 | Chains: D,F
F1-ATPASE protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 40 161
95 % 15 42 222
90 % 15 42 233
70 % 20 63 139
50 % 20 63 167
40 % 20 63 182
30 % 20 63 195
Entity #3 | Chains: E
F1-ATPASE protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 40 161
95 % 16 42 222
90 % 16 42 233
70 % 21 63 139
50 % 21 63 167
40 % 21 63 182
30 % 21 63 195
Entity #4 | Chains: G
F1-ATPASE protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 39 760
95 % 14 39 1041
90 % 14 39 1064
70 % 15 41 1053
50 % 15 41 1099
40 % 18 56 631
30 % 18 56 634

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.