Sequence Similarity Clusters for the Entities in PDB 1NBM

Entity #1 | Chains: A,B,C
F1-ATPASE protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 29 365
95 % 15 41 298 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 15 41 311
70 % 19 62 169
50 % 22 74 170
40 % 22 74 184
30 % 22 74 196
Entity #2 | Chains: D,F
F1-ATPASE protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 40 218
95 % 15 42 299 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.1
PDBFlex
90 % 15 42 312
70 % 22 75 143
50 % 22 76 168
40 % 22 76 181
30 % 22 76 193
Entity #3 | Chains: E
F1-ATPASE protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 40 218
95 % 16 42 299 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.1
PDBFlex
90 % 16 42 312
70 % 23 75 143
50 % 23 76 168
40 % 23 76 181
30 % 23 76 193
Entity #4 | Chains: G
F1-ATPASE protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 39 930
95 % 14 39 1256 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.2
PDBFlex
90 % 14 39 1283
70 % 15 41 1238
50 % 15 41 1302
40 % 20 68 623
30 % 20 68 611

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures