Sequence Similarity Clusters for the Entities in PDB 1NBF

Entity #1 | Chains: A,B,E
Ubiquitin carboxyl-terminal hydrolase 7 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 15 1709
95 % 14 20 1510 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.4
PDBFlex
90 % 14 20 1546
70 % 14 20 1553
50 % 14 20 1597
40 % 14 20 1589
30 % 14 20 1577
Entity #2 | Chains: C,D
Ubiquitin aldehyde protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 174 379 4
95 % 186 400 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 195 413 6
70 % 208 446 8
50 % 214 467 11
40 % 226 492 16
30 % 271 644 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures