Sequence Similarity Clusters for the Entities in PDB 1NBF

Entity #1 | Chains: A,B,E
Ubiquitin carboxyl-terminal hydrolase 7 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 6841
95 % 8 10 3884 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 8 10 3921
70 % 8 10 3864
50 % 8 10 3764
40 % 8 10 3609
30 % 8 10 3366
Entity #2 | Chains: C,D
Ubiquitin aldehyde protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 147 307 6
95 % 179 374 5 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 1.1
PDBFlex
90 % 193 400 6
70 % 201 420 8
50 % 207 441 12
40 % 218 465 17
30 % 443 1012 10

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.