Sequence Similarity Clusters for the Entities in PDB 1NBF

Entity #1 | Chains: A,B,E
Ubiquitin carboxyl-terminal hydrolase 7 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 16 1397
95 % 15 21 1444 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.4
PDBFlex
90 % 15 21 1470
70 % 15 21 1474
50 % 15 21 1536
40 % 15 21 1542
30 % 15 21 1522
Entity #2 | Chains: C,D
Ubiquitin aldehyde protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 159 332 5
95 % 197 410 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 211 437 6
70 % 220 460 8
50 % 226 481 11
40 % 237 505 15
30 % 467 1062 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures