Sequence Similarity Clusters for the Entities in PDB 1NBF

Entity #1 | Chains: A,B,E
Ubiquitin carboxyl-terminal hydrolase 7 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 4198
95 % 9 12 3011 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.4
PDBFlex
90 % 9 12 3059
70 % 9 12 3048
50 % 9 12 2990
40 % 9 12 2944
30 % 9 12 2759
Entity #2 | Chains: C,D
Ubiquitin aldehyde protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 148 314 4
95 % 181 383 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.0
PDBFlex
90 % 195 410 6
70 % 203 430 8
50 % 209 451 12
40 % 220 475 17
30 % 447 1026 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.