Sequence Similarity Clusters for the Entities in PDB 1NB7

Entity #1 | Chains: E,F
5'-R(*UP*UP*UP*U)-3' rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
polyprotein protein, length: 570 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 6715
95 % 163 166 80 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 0.7
PDBFlex
90 % 163 166 83
70 % 201 204 81
50 % 201 204 113
40 % 201 204 137
30 % 201 204 149

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures