Sequence Similarity Clusters for the Entities in PDB 1NB5

Entity #1 | Chains: A,B,C,D
Cathepsin H protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 6808
95 % 2 3 7343
90 % 2 3 7307
70 % 2 3 7090
50 % 2 3 6551
40 % 182 212 131
30 % 208 244 123
Entity #2 | Chains: P,R,S,T
Cathepsin H MINI CHAIN protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: I,J,K,L
STEFIN A protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 2523
95 % 4 12 2567
90 % 4 12 2619
70 % 4 12 2600
50 % 7 15 1528
40 % 7 15 1557
30 % 7 15 1530

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.