Sequence Similarity Clusters for the Entities in PDB 1NB5

Entity #1 | Chains: A,B,C,D
Cathepsin H protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 8393
95 % 2 3 8448 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 3 8371
70 % 2 3 8056
50 % 2 3 7412
40 % 208 242 125
30 % 241 282 118
Entity #2 | Chains: P,R,S,T
Cathepsin H MINI CHAIN protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: I,J,K,L
STEFIN A protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 12 2508
95 % 4 12 2797 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 4 12 2857
70 % 4 12 2822
50 % 7 15 1639
40 % 7 15 1628
30 % 7 15 1613

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures