Sequence Similarity Clusters for the Entities in PDB 1NB3

Entity #1 | Chains: A,B,C,D
Cathepsin H protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 7155
95 % 3 3 7724 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 3 7680
70 % 3 3 7470
50 % 3 3 6872
40 % 199 212 132
30 % 233 248 126
Entity #2 | Chains: P,R,S,T
CATHEPSIN H MINI CHAIN protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: I,J,K,L
Stefin A protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 2646
95 % 5 12 2676 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 5 12 2723
70 % 5 12 2700
50 % 8 15 1585
40 % 8 15 1608
30 % 8 15 1580

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.