Sequence Similarity Clusters for the Entities in PDB 1NAP

Entity #1 | Chains: A,B,C,D
NEUTROPHIL ACTIVATING PEPTIDE-2 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 9879
95 % 2 2 9953 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 2 2 9833
70 % 2 2 9341
50 % 6 32 588
40 % 6 32 627
30 % 8 52 442

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.