Sequence Similarity Clusters for the Entities in PDB 1NAP

Entity #1 | Chains: A,B,C,D
NEUTROPHIL ACTIVATING PEPTIDE-2 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10117
95 % 2 2 10154 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 2 2 10031
70 % 2 2 9527
50 % 6 33 593
40 % 6 33 628
30 % 8 53 450

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures