Sequence Similarity Clusters for the Entities in PDB 1NAN

Entity #1 | Chains: H,L
H-2 class I histocompatibility antigen, K-B alpha chain protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 49 434
95 % 41 65 413 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 43 70 388
70 % 481 732 6
50 % 482 737 7
40 % 516 788 10
30 % 558 919 15
Entity #2 | Chains: I,P
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 77 136 98
95 % 116 234 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 116 234 65
70 % 584 936 4
50 % 596 958 3
40 % 596 958 7
30 % 596 958 12
Entity #3 | Chains: M,Q
pBM1 peptide protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures