Sequence Similarity Clusters for the Entities in PDB 1NAN

Entity #1 | Chains: H,L
H-2 class I histocompatibility antigen, K-B alpha chain protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 53 454
95 % 41 65 426 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 43 70 391
70 % 493 746 6
50 % 502 760 7
40 % 530 812 9
30 % 576 939 13
Entity #2 | Chains: I,P
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 94 189 81
95 % 116 234 62 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 116 234 66
70 % 599 953 4
50 % 611 975 3
40 % 611 975 6
30 % 611 975 9
Entity #3 | Chains: M,Q
pBM1 peptide protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures