Sequence Similarity Clusters for the Entities in PDB 1NAN

Entity #1 | Chains: H,L
H-2 class I histocompatibility antigen, K-B alpha chain protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 49 387
95 % 41 65 352 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 43 70 356
70 % 455 681 6
50 % 456 686 6
40 % 489 736 10
30 % 525 853 15
Entity #2 | Chains: I,P
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 77 133 95
95 % 108 215 64 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 108 215 68
70 % 555 872 4
50 % 567 894 4
40 % 567 894 8
30 % 567 894 14
Entity #3 | Chains: M,Q
pBM1 peptide protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.