Sequence Similarity Clusters for the Entities in PDB 1NAM

Entity #1 | Chains: A
BM3.3 T Cell Receptor alpha-Chain protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 32595
95 % 2 2 28156 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 2 2 27077
70 % 2 2 24434
50 % 2 2 20953
40 % 264 366 26
30 % 5192 7330 1
Entity #2 | Chains: B
BM3.3 T Cell Receptor beta-Chain protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 28935
95 % 2 3 25284 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.8
PDBFlex
90 % 4 5 13346
70 % 4 5 12521
50 % 4 5 11132
40 % 4 5 10007
30 % 5193 7330 1
Entity #3 | Chains: H
H-2 class I histocompatibility antigen, K-B alpha chain precursor protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 53 456
95 % 55 65 433 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 59 70 402
70 % 664 746 5
50 % 675 760 6
40 % 711 812 8
30 % 797 939 12
Entity #4 | Chains: P
Nucleocapsid protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: L
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 45 539
95 % 184 234 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 184 234 67
70 % 819 953 3
50 % 833 975 2
40 % 833 975 5
30 % 833 975 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1FO0 4 A PROTEIN (BM3.3 T CELL RECEPTOR ALPHA-CHAIN) FV FRAGMENT, VARIABLE DOMAIN 10090
2 1NAM 1 A BM3.3 T Cell Receptor alpha-Chain Fv Fragment, Variable Domain 10090