Sequence Similarity Clusters for the Entities in PDB 1NAM

Entity #1 | Chains: A
BM3.3 T Cell Receptor alpha-Chain protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 32213
95 % 2 2 27845 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 2 2 26795
70 % 2 2 24194
50 % 2 2 20755
40 % 262 361 27
30 % 5094 7175 1
Entity #2 | Chains: B
BM3.3 T Cell Receptor beta-Chain protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 28610
95 % 2 3 25016 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.8
PDBFlex
90 % 4 5 13189
70 % 4 5 12375
50 % 4 5 11009
40 % 4 5 9906
30 % 5095 7175 1
Entity #3 | Chains: H
H-2 class I histocompatibility antigen, K-B alpha chain precursor protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 53 453
95 % 55 65 425 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 59 70 391
70 % 659 740 6
50 % 670 754 7
40 % 706 806 9
30 % 789 930 12
Entity #4 | Chains: P
Nucleocapsid protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: L
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 45 525
95 % 184 234 62 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 184 234 66
70 % 811 944 4
50 % 825 966 3
40 % 825 966 6
30 % 825 966 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1FO0 4 A PROTEIN (BM3.3 T CELL RECEPTOR ALPHA-CHAIN) FV FRAGMENT, VARIABLE DOMAIN 10090
2 1NAM 1 A BM3.3 T Cell Receptor alpha-Chain Fv Fragment, Variable Domain 10090