Sequence Similarity Clusters for the Entities in PDB 1NAM

Entity #1 | Chains: A
BM3.3 T Cell Receptor alpha-Chain protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 46336
95 % 2 2 34697 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 2 2 33153
70 % 2 2 29491
50 % 2 2 25170
40 % 700 931 5
30 % 778 1059 7
Entity #2 | Chains: B
BM3.3 T Cell Receptor beta-Chain protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 29441
95 % 2 3 24423 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.8
PDBFlex
90 % 2 3 23625
70 % 4 5 12209
50 % 4 5 10887
40 % 4 5 9872
30 % 779 1059 7
Entity #3 | Chains: H
H-2 class I histocompatibility antigen, K-B alpha chain precursor protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 49 412
95 % 55 65 367 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 59 70 368
70 % 642 717 6
50 % 644 722 6
40 % 685 773 10
30 % 765 897 15
Entity #4 | Chains: P
Nucleocapsid protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: L
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 111 135 96
95 % 180 228 60 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 180 228 65
70 % 790 914 4
50 % 804 936 3
40 % 804 936 7
30 % 804 936 12

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1FO0 4 A PROTEIN (BM3.3 T CELL RECEPTOR ALPHA-CHAIN) FV FRAGMENT, VARIABLE DOMAIN 10090
2 1NAM 1 A BM3.3 T Cell Receptor alpha-Chain Fv Fragment, Variable Domain 10090