Sequence Similarity Clusters for the Entities in PDB 1NAM

Entity #1 | Chains: A
BM3.3 T Cell Receptor alpha-Chain protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 42309
95 % 2 2 31674
90 % 2 2 30336
70 % 2 2 27141
50 % 2 2 23273
40 % 620 814 5
30 % 696 940 8
Entity #2 | Chains: B
BM3.3 T Cell Receptor beta-Chain protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 26775
95 % 2 3 22189
90 % 2 3 21494
70 % 4 5 11134
50 % 4 5 9988
40 % 4 5 9063
30 % 697 940 8
Entity #3 | Chains: H
H-2 class I histocompatibility antigen, K-B alpha chain precursor protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 49 302
95 % 55 65 328
90 % 59 70 328
70 % 564 630 7
50 % 566 635 7
40 % 598 677 11
30 % 671 793 14
Entity #4 | Chains: P
Nucleocapsid protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: L
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 131 90
95 % 166 212 65
90 % 166 212 69
70 % 708 823 5
50 % 720 843 5
40 % 720 843 9
30 % 720 843 12

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.