Sequence Similarity Clusters for the Entities in PDB 1NAM

Entity #1 | Chains: A
BM3.3 T Cell Receptor alpha-Chain protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 43267
95 % 2 2 32410
90 % 2 2 31043
70 % 2 2 27754
50 % 2 2 23782
40 % 634 840 5
30 % 710 966 7
Entity #2 | Chains: B
BM3.3 T Cell Receptor beta-Chain protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 27397
95 % 2 3 22714
90 % 2 3 22001
70 % 4 5 11329
50 % 4 5 10162
40 % 4 5 9206
30 % 711 966 7
Entity #3 | Chains: H
H-2 class I histocompatibility antigen, K-B alpha chain precursor protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 49 347
95 % 55 65 334
90 % 59 70 337
70 % 583 649 7
50 % 585 654 7
40 % 622 701 11
30 % 695 817 14
Entity #4 | Chains: P
Nucleocapsid protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: L
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 131 92
95 % 166 212 65
90 % 166 212 69
70 % 732 847 5
50 % 744 867 5
40 % 744 867 9
30 % 744 867 13

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.