Sequence Similarity Clusters for the Entities in PDB 1NAM

Entity #1 | Chains: A
BM3.3 T Cell Receptor alpha-Chain protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 45538
95 % 2 2 34106
90 % 2 2 32611
70 % 2 2 29059
50 % 2 2 24826
40 % 677 897 5
30 % 753 1023 7
Entity #2 | Chains: B
BM3.3 T Cell Receptor beta-Chain protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 28925
95 % 2 3 23995
90 % 2 3 23224
70 % 4 5 12018
50 % 4 5 10726
40 % 4 5 9730
30 % 754 1023 7
Entity #3 | Chains: H
H-2 class I histocompatibility antigen, K-B alpha chain precursor protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 49 403
95 % 55 65 358
90 % 59 70 361
70 % 623 692 6
50 % 625 697 6
40 % 666 748 10
30 % 742 868 15
Entity #4 | Chains: P
Nucleocapsid protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: L
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 111 133 95
95 % 171 217 64
90 % 171 217 68
70 % 768 885 4
50 % 782 907 3
40 % 782 907 9
30 % 782 907 14

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.