Sequence Similarity Clusters for the Entities in PDB 1NAM

Entity #1 | Chains: A
BM3.3 T Cell Receptor alpha-Chain protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 43896
95 % 2 2 32865
90 % 2 2 31461
70 % 2 2 28112
50 % 2 2 24084
40 % 642 848 5
30 % 718 974 7
Entity #2 | Chains: B
BM3.3 T Cell Receptor beta-Chain protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 27786
95 % 2 3 23028
90 % 2 3 22301
70 % 4 5 11504
50 % 4 5 10311
40 % 4 5 9339
30 % 719 974 7
Entity #3 | Chains: H
H-2 class I histocompatibility antigen, K-B alpha chain precursor protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 49 367
95 % 55 65 344
90 % 59 70 349
70 % 597 664 7
50 % 599 669 7
40 % 637 717 10
30 % 710 834 15
Entity #4 | Chains: P
Nucleocapsid protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: L
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 131 95
95 % 167 213 66
90 % 167 213 70
70 % 743 859 5
50 % 755 879 5
40 % 755 879 9
30 % 755 879 14

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.