Sequence Similarity Clusters for the Entities in PDB 1NAK

Entity #1 | Chains: L,M
Fab 83.1 - light chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40058
95 % 141 145 147 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 151 155 150
70 % 1851 2287 1
50 % 3757 4633 1
40 % 3757 4633 1
30 % 4439 5461 1
Entity #2 | Chains: H,I
Fab 83.1 - heavy chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40563
95 % 1 1 30949 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 11 12 3563
70 % 1816 2244 2
50 % 3758 4633 1
40 % 3758 4633 1
30 % 4440 5461 1
Entity #3 | Chains: P,Q
Peptide MP1 protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.