Sequence Similarity Clusters for the Entities in PDB 1NAK

Entity #1 | Chains: L,M
Fab 83.1 - light chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41183
95 % 141 146 149 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 151 156 149
70 % 1955 2416 1
50 % 3966 4892 1
40 % 3966 4892 1
30 % 4683 5759 1
Entity #2 | Chains: H,I
Fab 83.1 - heavy chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41705
95 % 1 1 31758 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 11 12 3685
70 % 1913 2366 2
50 % 3967 4892 1
40 % 3967 4892 1
30 % 4684 5759 1
Entity #3 | Chains: P,Q
Peptide MP1 protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures