Sequence Similarity Clusters for the Entities in PDB 1NAK

Entity #1 | Chains: L,M
Fab 83.1 - light chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39478
95 % 141 145 146 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 151 155 148
70 % 1837 2265 1
50 % 3729 4589 1
40 % 3729 4589 1
30 % 4391 5394 1
Entity #2 | Chains: H,I
Fab 83.1 - heavy chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39977
95 % 1 1 30484 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 11 12 3524
70 % 1803 2223 2
50 % 3730 4589 1
40 % 3730 4589 1
30 % 4392 5394 1
Entity #3 | Chains: P,Q
Peptide MP1 protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.