Sequence Similarity Clusters for the Entities in PDB 1NAK

Entity #1 | Chains: L,M
Fab 83.1 - light chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39426
95 % 138 147 153 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 152 162 147
70 % 2047 2553 1
50 % 4162 5180 1
40 % 4682 5834 1
30 % 5839 7269 1
Entity #2 | Chains: H,I
Fab 83.1 - heavy chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39425
95 % 1 1 33304 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 13 14 2792
70 % 2013 2511 2
50 % 4163 5180 1
40 % 4683 5834 1
30 % 5840 7269 1
Entity #3 | Chains: P,Q
Peptide MP1 protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures