Sequence Similarity Clusters for the Entities in PDB 1NAK

Entity #1 | Chains: L,M
Fab 83.1 - light chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 37385
95 % 138 142 144
90 % 143 147 149
70 % 1438 1729 2
50 % 3476 4220 1
40 % 3477 4221 1
30 % 4094 4972 1
Entity #2 | Chains: H,I
Fab 83.1 - heavy chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 37853
95 % 1 1 28864
90 % 10 11 3870
70 % 1679 2041 1
50 % 3477 4220 1
40 % 3478 4221 1
30 % 4095 4972 1
Entity #3 | Chains: P,Q
Peptide MP1 protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.