Sequence Similarity Clusters for the Entities in PDB 1NA1

Entity #1 | Chains: A
Coat protein VP1 protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 22 2041
95 % 5 32 1620
90 % 5 32 1654
70 % 5 33 1626
50 % 5 33 1682
40 % 51 148 283
30 % 51 148 287
Entity #2 | Chains: B
Coat protein VP2 protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 28 1458
95 % 4 31 1695
90 % 5 32 1658
70 % 5 33 1627
50 % 48 150 302
40 % 48 150 318
30 % 62 178 170
Entity #3 | Chains: C
Coat protein VP3 protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 32 1197
95 % 5 32 1638
90 % 5 32 1670
70 % 5 33 1635
50 % 34 114 433
40 % 51 159 263
30 % 66 189 154
Entity #4 | Chains: D
Coat protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 32 1236
95 % 5 33 1578
90 % 5 33 1613
70 % 23 82 578
50 % 43 116 431
40 % 43 116 470
30 % 43 116 460

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.