Sequence Similarity Clusters for the Entities in PDB 1NA1

Entity #1 | Chains: A
Coat protein VP1 protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 35 1445
95 % 5 36 1677 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 5 36 1711
70 % 5 37 1630
50 % 5 37 1681
40 % 51 160 317
30 % 51 160 326
Entity #2 | Chains: B
Coat protein VP2 protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 35 1444
95 % 4 35 1697 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.1
PDBFlex
90 % 5 36 1623
70 % 5 37 1629
50 % 48 160 359
40 % 48 160 385
30 % 64 197 184
Entity #3 | Chains: C
Coat protein VP3 protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 36 1361
95 % 5 36 1596 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 5 36 1626
70 % 5 37 1628
50 % 51 169 266
40 % 51 171 291
30 % 68 210 164
Entity #4 | Chains: D
Coat protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 36 1356
95 % 5 36 1594 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 5 36 1624
70 % 23 87 616
50 % 43 122 468
40 % 44 123 506
30 % 44 123 503

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures