Sequence Similarity Clusters for the Entities in PDB 1NA1

Entity #1 | Chains: A
Coat protein VP1 protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 26 1700
95 % 5 36 1496 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 5 36 1528
70 % 5 37 1467
50 % 5 37 1525
40 % 51 159 276
30 % 51 159 285
Entity #2 | Chains: B
Coat protein VP2 protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 28 1554
95 % 4 35 1564 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.0
PDBFlex
90 % 5 36 1534
70 % 5 37 1468
50 % 48 159 303
40 % 48 159 315
30 % 63 194 165
Entity #3 | Chains: C
Coat protein VP3 protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 36 1119
95 % 5 36 1509 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 5 36 1541
70 % 5 37 1470
50 % 51 168 240
40 % 51 170 258
30 % 67 209 148
Entity #4 | Chains: D
Coat protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 35 1174
95 % 5 36 1539 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.1
PDBFlex
90 % 5 36 1571
70 % 23 87 565
50 % 43 122 435
40 % 44 123 463
30 % 44 123 460

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.