Sequence Similarity Clusters for the Entities in PDB 1NA1

Entity #1 | Chains: A
Coat protein VP1 protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 35 1400
95 % 5 36 1633 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 5 36 1667
70 % 5 37 1579
50 % 5 37 1624
40 % 51 160 301
30 % 51 160 314
Entity #2 | Chains: B
Coat protein VP2 protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 35 1399
95 % 4 35 1652 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.1
PDBFlex
90 % 5 36 1582
70 % 5 37 1578
50 % 48 160 350
40 % 48 160 375
30 % 64 197 181
Entity #3 | Chains: C
Coat protein VP3 protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 36 1323
95 % 5 36 1556 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 5 36 1587
70 % 5 37 1577
50 % 51 169 258
40 % 51 171 282
30 % 68 210 162
Entity #4 | Chains: D
Coat protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 36 1317
95 % 5 36 1552 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 5 36 1583
70 % 23 87 595
50 % 43 122 459
40 % 44 123 491
30 % 44 123 490

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures