Sequence Similarity Clusters for the Entities in PDB 1N8Z

Entity #1 | Chains: A
Herceptin Fab (antibody) - light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39923
95 % 72 164 69 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.2
PDBFlex
90 % 400 693 3
70 % 1307 2264 1
50 % 2666 4587 1
40 % 2666 4587 1
30 % 3063 5392 1
Entity #2 | Chains: B
Herceptin Fab (antibody) - heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 12480
95 % 11 12 3662 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.4
PDBFlex
90 % 121 212 40
70 % 1291 2222 2
50 % 2667 4587 1
40 % 2667 4587 1
30 % 3064 5392 1
Entity #3 | Chains: C
Receptor protein-tyrosine kinase erbB-2 protein, length: 607 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 4351
95 % 3 11 4836
90 % 3 11 4847
70 % 4 12 4393
50 % 4 12 4226
40 % 7 35 1061
30 % 7 35 1038

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.