Sequence Similarity Clusters for the Entities in PDB 1N8Z

Entity #1 | Chains: A
Herceptin Fab (antibody) - light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 38791
95 % 68 154 72
90 % 372 644 3
70 % 1045 1775 2
50 % 2574 4367 1
40 % 2574 4367 1
30 % 2959 5151 1
Entity #2 | Chains: B
Herceptin Fab (antibody) - heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 12062
95 % 11 12 3557
90 % 115 199 60
70 % 1245 2111 1
50 % 2575 4367 1
40 % 2575 4367 1
30 % 2960 5151 1
Entity #3 | Chains: C
Receptor protein-tyrosine kinase erbB-2 protein, length: 607 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 9 5232
95 % 2 10 4984
90 % 2 10 5003
70 % 3 11 4589
50 % 3 11 4429
40 % 6 34 1049
30 % 6 34 1028

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.