Sequence Similarity Clusters for the Entities in PDB 1N8Z

Entity #1 | Chains: A
Herceptin Fab (antibody) - light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40562
95 % 72 165 69 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.3
PDBFlex
90 % 403 701 3
70 % 1319 2287 1
50 % 2689 4633 1
40 % 2689 4633 1
30 % 3097 5461 1
Entity #2 | Chains: B
Herceptin Fab (antibody) - heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 12676
95 % 11 12 3712 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.5
PDBFlex
90 % 124 217 39
70 % 1302 2244 2
50 % 2690 4633 1
40 % 2690 4633 1
30 % 3098 5461 1
Entity #3 | Chains: C
Receptor protein-tyrosine kinase erbB-2 protein, length: 607 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 10 4440
95 % 3 11 4932 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.5
PDBFlex
90 % 3 11 4946
70 % 4 12 4462
50 % 4 12 4291
40 % 7 37 983
30 % 7 37 955

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.