Sequence Similarity Clusters for the Entities in PDB 1N8Z

Entity #1 | Chains: A
Herceptin Fab (antibody) - light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41704
95 % 92 192 62 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.2
PDBFlex
90 % 446 762 2
70 % 1403 2416 1
50 % 2858 4892 1
40 % 2858 4892 1
30 % 3286 5759 1
Entity #2 | Chains: B
Herceptin Fab (antibody) - heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 10 3440
95 % 15 17 2233 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.4
PDBFlex
90 % 144 249 37
70 % 1381 2366 2
50 % 2859 4892 1
40 % 2859 4892 1
30 % 3287 5759 1
Entity #3 | Chains: C
Receptor protein-tyrosine kinase erbB-2 protein, length: 607 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 10 4602
95 % 3 11 5101 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 3 11 5113
70 % 4 12 4601
50 % 4 12 4415
40 % 7 37 1006
30 % 7 37 986

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures