Sequence Similarity Clusters for the Entities in PDB 1N8Z

Entity #1 | Chains: A
Herceptin Fab (antibody) - light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 38455
95 % 68 154 70
90 % 369 640 3
70 % 1041 1765 2
50 % 2564 4337 1
40 % 2564 4337 1
30 % 2941 5109 1
Entity #2 | Chains: B
Herceptin Fab (antibody) - heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 11946
95 % 11 12 3531
90 % 115 198 58
70 % 1240 2096 1
50 % 2565 4337 1
40 % 2565 4337 1
30 % 2942 5109 1
Entity #3 | Chains: C
Receptor protein-tyrosine kinase erbB-2 protein, length: 607 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 6425
95 % 2 8 6147
90 % 2 8 6134
70 % 3 9 5649
50 % 3 9 5319
40 % 6 32 1077
30 % 6 32 1059

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.