Sequence Similarity Clusters for the Entities in PDB 1N8Z

Entity #1 | Chains: A
Herceptin Fab (antibody) - light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 3798
95 % 94 189 66 Flexibility: Low
Max RMSD: 7.7, Avg RMSD: 2.3
PDBFlex
90 % 453 780 2
70 % 1474 2553 1
50 % 3011 5180 1
40 % 3432 5834 1
30 % 4224 7269 1
Entity #2 | Chains: B
Herceptin Fab (antibody) - heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 4521
95 % 19 21 1893 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.4
PDBFlex
90 % 166 284 17
70 % 1455 2511 2
50 % 3012 5180 1
40 % 3433 5834 1
30 % 4225 7269 1
Entity #3 | Chains: C
Receptor protein-tyrosine kinase erbB-2 protein, length: 607 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 12 4510
95 % 3 13 4534 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.4
PDBFlex
90 % 3 13 4577
70 % 4 14 4051
50 % 4 14 3936
40 % 7 42 947
30 % 8 44 895

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures