Sequence Similarity Clusters for the Entities in PDB 1N8R

Entity #1 | Chains: A
23S ribosomal RNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
50S ribosomal protein L10e protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 20 2372
95 % 8 20 3005
90 % 8 20 3048
70 % 9 27 2114
50 % 52 74 692
40 % 52 79 676
30 % 52 79 677
Entity #11 | Chains: K
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 74 418
95 % 52 74 585
90 % 52 74 616
70 % 52 74 648
50 % 52 74 697
40 % 53 77 700
30 % 53 78 686
Entity #12 | Chains: L
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 44 827
95 % 52 68 660
90 % 52 68 689
70 % 52 68 734
50 % 56 175 201
40 % 56 175 223
30 % 95 509 31
Entity #13 | Chains: M
50S ribosomal protein L15P protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 74 417
95 % 52 74 584
90 % 52 74 615
70 % 52 74 645
50 % 52 74 693
40 % 52 74 732
30 % 94 491 37
Entity #14 | Chains: N
50S ribosomal protein L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 20 2356
95 % 8 20 2985
90 % 8 20 3029
70 % 52 68 726
50 % 56 171 207
40 % 56 171 231
30 % 56 171 237
Entity #15 | Chains: O
50S ribosomal protein L18P protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 74 415
95 % 52 74 582
90 % 52 74 613
70 % 52 74 642
50 % 52 76 664
40 % 52 76 707
30 % 52 79 675
Entity #16 | Chains: P
50S ribosomal protein L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 68 469
95 % 52 68 661
90 % 52 68 691
70 % 52 68 736
50 % 52 70 757
40 % 52 70 793
30 % 52 70 784
Entity #17 | Chains: Q
50S ribosomal protein L19E protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 21 2168
95 % 52 68 659
90 % 52 68 687
70 % 52 68 732
50 % 52 68 784
40 % 52 72 759
30 % 52 72 751
Entity #18 | Chains: R
50S ribosomal protein L21e protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 68 471
95 % 52 68 664
90 % 52 68 693
70 % 52 68 739
50 % 52 70 759
40 % 52 70 795
30 % 52 71 766
Entity #19 | Chains: S
50S ribosomal protein L22P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 67 485
95 % 52 68 657
90 % 52 68 685
70 % 52 68 729
50 % 52 68 781
40 % 52 68 816
30 % 56 174 231
Entity #2 | Chains: B
5S ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
50S ribosomal protein L23P protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 74 422
95 % 52 74 588
90 % 52 74 619
70 % 52 74 651
50 % 52 76 669
40 % 52 78 688
30 % 90 399 60
Entity #21 | Chains: U
50S ribosomal protein L24P protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 74 421
95 % 52 74 587
90 % 52 74 618
70 % 52 74 650
50 % 56 179 196
40 % 56 179 216
30 % 56 179 226
Entity #22 | Chains: V
50S ribosomal protein L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 70 448
95 % 49 70 631
90 % 49 70 660
70 % 49 70 709
50 % 49 70 760
40 % 49 70 798
30 % 49 70 788
Entity #23 | Chains: W
50S ribosomal protein L29P protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 74 423
95 % 52 74 589
90 % 52 74 620
70 % 52 74 652
50 % 52 74 698
40 % 52 74 735
30 % 52 74 727
Entity #24 | Chains: X
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 68 467
95 % 52 68 658
90 % 52 68 686
70 % 52 68 730
50 % 52 68 782
40 % 52 70 790
30 % 52 71 763
Entity #25 | Chains: Y
50S ribosomal protein L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 68 473
95 % 52 68 666
90 % 52 68 695
70 % 52 68 741
50 % 52 68 787
40 % 52 68 820
30 % 52 68 809
Entity #26 | Chains: Z
50S ribosomal protein L32E protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 63 541
95 % 48 63 751
90 % 48 63 779
70 % 48 63 823
50 % 48 63 866
40 % 48 63 888
30 % 48 63 875
Entity #27 | Chains: 1
50S ribosomal protein L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 20 2434
95 % 8 20 3051
90 % 8 20 3093
70 % 9 21 2846
50 % 15 30 1900
40 % 19 128 299
30 % 40 151 269
Entity #28 | Chains: 2
50S ribosomal protein L37e protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 68 475
95 % 52 68 669
90 % 52 68 698
70 % 52 68 745
50 % 52 69 769
40 % 52 69 809
30 % 52 69 802
Entity #29 | Chains: 3
50S ribosomal protein L39e protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 20 2441
95 % 52 68 670
90 % 52 68 699
70 % 52 68 746
50 % 56 172 204
40 % 56 172 228
30 % 56 172 234
Entity #3 | Chains: C
50S ribosomal protein L2P protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 21 2151
95 % 52 68 653
90 % 52 68 681
70 % 52 68 724
50 % 56 170 206
40 % 56 172 227
30 % 56 172 233
Entity #30 | Chains: 4
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 68 472
95 % 52 68 665
90 % 52 68 694
70 % 52 68 740
50 % 52 68 786
40 % 52 68 819
30 % 56 168 243
Entity #4 | Chains: D
50S ribosomal protein L3P protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 67 482
95 % 52 74 573
90 % 52 74 605
70 % 52 74 638
50 % 52 74 687
40 % 56 179 214
30 % 56 179 223
Entity #5 | Chains: E
50S ribosomal protein L4E protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 44 820
95 % 52 74 578
90 % 52 74 611
70 % 52 74 641
50 % 52 74 689
40 % 52 76 705
30 % 53 78 683
Entity #6 | Chains: F
50S ribosomal protein L5P protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 74 416
95 % 52 74 583
90 % 52 74 614
70 % 52 74 643
50 % 52 74 691
40 % 57 179 215
30 % 57 179 225
Entity #7 | Chains: G
50S ribosomal protein L6P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 68 466
95 % 52 68 656
90 % 52 68 684
70 % 52 68 728
50 % 52 68 780
40 % 56 173 224
30 % 95 500 34
Entity #8 | Chains: H
50S ribosomal protein L7Ae protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 21 2179
95 % 9 21 2814
90 % 52 68 690
70 % 52 68 735
50 % 76 105 321
40 % 83 122 277
30 % 83 124 279
Entity #9 | Chains: I
Acidic ribosomal protein P0 homolog protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 44 814
95 % 49 64 731
90 % 49 64 760
70 % 49 64 802
50 % 49 64 850
40 % 49 64 874
30 % 49 65 848

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.