Sequence Similarity Clusters for the Entities in PDB 1N8R

Entity #1 | Chains: A
23S ribosomal RNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
50S ribosomal protein L10e protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 20 2351
95 % 8 20 2980
90 % 8 20 3024
70 % 9 27 2100
50 % 52 74 684
40 % 52 79 666
30 % 52 79 673
Entity #11 | Chains: K
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 74 414
95 % 52 74 577
90 % 52 74 607
70 % 52 74 640
50 % 52 74 689
40 % 53 77 691
30 % 53 78 682
Entity #12 | Chains: L
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 44 823
95 % 52 68 652
90 % 52 68 679
70 % 52 68 722
50 % 56 175 200
40 % 56 175 220
30 % 95 509 30
Entity #13 | Chains: M
50S ribosomal protein L15P protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 74 413
95 % 52 74 576
90 % 52 74 606
70 % 52 74 637
50 % 52 74 685
40 % 52 74 724
30 % 94 491 36
Entity #14 | Chains: N
50S ribosomal protein L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 20 2336
95 % 8 20 2961
90 % 8 20 3007
70 % 52 68 714
50 % 56 171 205
40 % 56 171 229
30 % 56 171 235
Entity #15 | Chains: O
50S ribosomal protein L18P protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 74 411
95 % 52 74 574
90 % 52 74 604
70 % 52 74 634
50 % 52 76 659
40 % 52 76 700
30 % 52 79 670
Entity #16 | Chains: P
50S ribosomal protein L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 68 463
95 % 52 68 653
90 % 52 68 681
70 % 52 68 724
50 % 52 70 746
40 % 52 70 784
30 % 52 70 779
Entity #17 | Chains: Q
50S ribosomal protein L19E protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 21 2151
95 % 52 68 651
90 % 52 68 677
70 % 52 68 720
50 % 52 68 773
40 % 52 72 751
30 % 52 72 747
Entity #18 | Chains: R
50S ribosomal protein L21e protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 68 465
95 % 52 68 656
90 % 52 68 683
70 % 52 68 728
50 % 52 70 748
40 % 52 70 786
30 % 52 71 761
Entity #19 | Chains: S
50S ribosomal protein L22P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 67 478
95 % 52 68 649
90 % 52 68 675
70 % 52 68 717
50 % 52 68 770
40 % 52 68 806
30 % 56 174 228
Entity #2 | Chains: B
5S ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
50S ribosomal protein L23P protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 74 419
95 % 52 74 581
90 % 52 74 610
70 % 52 74 643
50 % 52 76 662
40 % 52 78 677
30 % 90 399 58
Entity #21 | Chains: U
50S ribosomal protein L24P protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 74 417
95 % 52 74 579
90 % 52 74 609
70 % 52 74 642
50 % 56 179 194
40 % 56 179 212
30 % 56 179 224
Entity #22 | Chains: V
50S ribosomal protein L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 70 444
95 % 49 70 627
90 % 49 70 654
70 % 49 70 697
50 % 49 70 749
40 % 49 70 789
30 % 49 70 783
Entity #23 | Chains: W
50S ribosomal protein L29P protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 74 421
95 % 52 74 582
90 % 52 74 611
70 % 52 74 644
50 % 52 74 690
40 % 52 74 727
30 % 52 74 725
Entity #24 | Chains: X
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 68 461
95 % 52 68 650
90 % 52 68 676
70 % 52 68 718
50 % 52 68 771
40 % 52 70 781
30 % 52 71 758
Entity #25 | Chains: Y
50S ribosomal protein L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 68 467
95 % 52 68 658
90 % 52 68 685
70 % 52 68 730
50 % 52 68 777
40 % 52 68 811
30 % 52 68 804
Entity #26 | Chains: Z
50S ribosomal protein L32E protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 63 531
95 % 48 63 742
90 % 48 63 772
70 % 48 63 814
50 % 48 63 858
40 % 48 63 879
30 % 48 63 868
Entity #27 | Chains: 1
50S ribosomal protein L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 20 2411
95 % 8 20 3027
90 % 8 20 3068
70 % 9 21 2821
50 % 15 30 1890
40 % 19 128 296
30 % 40 151 267
Entity #28 | Chains: 2
50S ribosomal protein L37e protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 68 468
95 % 52 68 659
90 % 52 68 686
70 % 52 68 733
50 % 52 69 758
40 % 52 69 799
30 % 52 69 795
Entity #29 | Chains: 3
50S ribosomal protein L39e protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 20 2418
95 % 52 68 660
90 % 52 68 687
70 % 52 68 734
50 % 56 172 202
40 % 56 172 227
30 % 56 172 233
Entity #3 | Chains: C
50S ribosomal protein L2P protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 21 2135
95 % 52 68 646
90 % 52 68 672
70 % 52 68 713
50 % 56 170 204
40 % 56 172 226
30 % 56 172 231
Entity #30 | Chains: 4
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 68 466
95 % 52 68 657
90 % 52 68 684
70 % 52 68 729
50 % 52 68 776
40 % 52 68 810
30 % 56 168 241
Entity #4 | Chains: D
50S ribosomal protein L3P protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 67 475
95 % 52 74 565
90 % 52 74 596
70 % 52 74 629
50 % 52 74 679
40 % 56 179 210
30 % 56 179 221
Entity #5 | Chains: E
50S ribosomal protein L4E protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 44 816
95 % 52 74 569
90 % 52 74 601
70 % 52 74 633
50 % 52 74 681
40 % 52 76 698
30 % 53 78 679
Entity #6 | Chains: F
50S ribosomal protein L5P protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 74 412
95 % 52 74 575
90 % 52 74 605
70 % 52 74 635
50 % 52 74 683
40 % 57 179 211
30 % 57 179 223
Entity #7 | Chains: G
50S ribosomal protein L6P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 68 460
95 % 52 68 648
90 % 52 68 674
70 % 52 68 716
50 % 52 68 769
40 % 56 173 223
30 % 95 500 32
Entity #8 | Chains: H
50S ribosomal protein L7Ae protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 21 2161
95 % 9 21 2792
90 % 52 68 680
70 % 52 68 723
50 % 76 105 316
40 % 83 120 286
30 % 83 122 283
Entity #9 | Chains: I
Acidic ribosomal protein P0 homolog protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 44 810
95 % 49 64 715
90 % 49 64 745
70 % 49 64 787
50 % 49 64 836
40 % 49 64 858
30 % 49 65 837

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.