Sequence Similarity Clusters for the Entities in PDB 1N8O

Entity #1 | Chains: A
Chymotrypsin A, A chain protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
Chymotrypsin A, b chain protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 38 852
95 % 23 38 1157 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 23 38 1182
70 % 23 40 1171
50 % 23 40 1213
40 % 24 42 1177
30 % 25 50 1016
Entity #3 | Chains: C
Chymotrypsin A, C chain protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 38 853
95 % 23 38 1158 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.4
PDBFlex
90 % 23 38 1184
70 % 23 40 1174
50 % 25 43 1143
40 % 26 52 1002
30 % 26 52 983
Entity #4 | Chains: E
ecotin protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 9719
95 % 3 18 2042 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.0
PDBFlex
90 % 3 18 2093
70 % 3 19 1771
50 % 3 19 1814
40 % 3 19 1824
30 % 3 19 1767

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures