Sequence Similarity Clusters for the Entities in PDB 1N8O

Entity #1 | Chains: A
Chymotrypsin A, A chain protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
Chymotrypsin A, b chain protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 38 819
95 % 23 38 1121 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 23 38 1145
70 % 23 40 1139
50 % 23 40 1179
40 % 24 42 1145
30 % 25 50 981
Entity #3 | Chains: C
Chymotrypsin A, C chain protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 38 820
95 % 23 38 1122 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.4
PDBFlex
90 % 23 38 1147
70 % 23 40 1142
50 % 25 43 1112
40 % 26 52 978
30 % 26 52 951
Entity #4 | Chains: E
ecotin protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 9426
95 % 3 18 1973 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 3 18 2020
70 % 3 19 1706
50 % 3 19 1748
40 % 3 19 1756
30 % 3 19 1708

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.