Sequence Similarity Clusters for the Entities in PDB 1N8O

Entity #1 | Chains: A
Chymotrypsin A, A chain protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
Chymotrypsin A, b chain protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 38 991
95 % 23 38 1201 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 23 38 1224
70 % 23 40 1208
50 % 23 40 1250
40 % 27 45 1151
30 % 28 53 983
Entity #3 | Chains: C
Chymotrypsin A, C chain protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 38 1005
95 % 23 38 1219 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.4
PDBFlex
90 % 23 38 1241
70 % 23 40 1217
50 % 28 46 1126
40 % 29 55 958
30 % 29 55 951
Entity #4 | Chains: E
ecotin protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 7086
95 % 3 18 2082 Flexibility: Low
Max RMSD: 9.8, Avg RMSD: 1.6
PDBFlex
90 % 3 18 2137
70 % 3 19 1840
50 % 3 19 1855
40 % 3 19 1836
30 % 3 19 1780

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures