Sequence Similarity Clusters for the Entities in PDB 1N8E

Entity #1 | Chains: A,D
Fibrin alpha/alpha-E chain protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 17 993
95 % 16 17 1349 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 16 17 1376
70 % 16 17 1395
50 % 16 17 1442
40 % 16 17 1450
30 % 16 17 1426
Entity #2 | Chains: B,E
Fibrin beta chain protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 25 669
95 % 27 28 800 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 27 28 828
70 % 27 28 867
50 % 29 30 827
40 % 29 30 863
30 % 58 61 399
Entity #3 | Chains: C,F
Fibrin gamma chain protein, length: 324 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 23 719
95 % 28 29 762 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 28 29 794
70 % 28 29 836
50 % 30 31 799
40 % 30 31 837
30 % 59 61 399

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.