Sequence Similarity Clusters for the Entities in PDB 1N86

Entity #1 | Chains: A,D
Fibrin alpha/alpha-E chain protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 1046
95 % 11 17 1411 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 11 17 1437
70 % 11 17 1440
50 % 11 17 1495
40 % 11 17 1493
30 % 11 17 1474
Entity #2 | Chains: B,E
Fibrin beta chain protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 25 695
95 % 22 28 833 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 22 28 864
70 % 22 28 902
50 % 24 30 848
40 % 24 30 888
30 % 47 61 424
Entity #3 | Chains: C,F
Fibrin gamma chain protein, length: 324 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 23 742
95 % 22 29 791 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 22 29 823
70 % 22 29 864
50 % 24 31 822
40 % 24 31 861
30 % 48 61 424
Entity #4 | Chains: G,H
fibrin alpha chain peptide ligand fragment Gly-Pro-Arg protein, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: I,J
fibrin beta chain peptide ligand fragment Gly-His-Arg-Pro-Leu-Asp-Lys protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures