Sequence Similarity Clusters for the Entities in PDB 1N86

Entity #1 | Chains: A,D
Fibrin alpha/alpha-E chain protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 1002
95 % 11 17 1355 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 11 17 1381
70 % 11 17 1400
50 % 11 17 1451
40 % 11 17 1458
30 % 11 17 1429
Entity #2 | Chains: B,E
Fibrin beta chain protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 25 675
95 % 22 28 808 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 22 28 836
70 % 22 28 872
50 % 24 30 829
40 % 24 30 866
30 % 47 61 413
Entity #3 | Chains: C,F
Fibrin gamma chain protein, length: 324 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 23 723
95 % 22 29 773 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 22 29 805
70 % 22 29 841
50 % 24 31 801
40 % 24 31 840
30 % 48 61 413
Entity #4 | Chains: G,H
fibrin alpha chain peptide ligand fragment Gly-Pro-Arg protein, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: I,J
fibrin beta chain peptide ligand fragment Gly-His-Arg-Pro-Leu-Asp-Lys protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures