Sequence Similarity Clusters for the Entities in PDB 1N86

Entity #1 | Chains: A,D
Fibrin alpha/alpha-E chain protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 973
95 % 11 17 1339 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.2
PDBFlex
90 % 11 17 1365
70 % 11 17 1382
50 % 11 17 1429
40 % 11 17 1442
30 % 11 17 1418
Entity #2 | Chains: B,E
Fibrin beta chain protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 25 660
95 % 22 28 795 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 22 28 822
70 % 22 28 861
50 % 24 30 820
40 % 24 30 855
30 % 47 61 394
Entity #3 | Chains: C,F
Fibrin gamma chain protein, length: 324 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 23 711
95 % 22 29 756 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.0
PDBFlex
90 % 22 29 788
70 % 22 29 829
50 % 24 31 789
40 % 24 31 825
30 % 48 61 394
Entity #4 | Chains: G,H
fibrin alpha chain peptide ligand fragment Gly-Pro-Arg protein, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: I,J
fibrin beta chain peptide ligand fragment Gly-His-Arg-Pro-Leu-Asp-Lys protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.