Sequence Similarity Clusters for the Entities in PDB 1N7S

Entity #1 | Chains: A
vesicle-associated membrane protein 2 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 12 3909
95 % 1 12 4713
90 % 1 12 4742
70 % 1 12 4641
50 % 1 12 4446
40 % 1 12 4228
30 % 2 14 3104
Entity #2 | Chains: B
Syntaxin 1A protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 20 1221
95 % 1 20 1634 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 1.3
PDBFlex
90 % 1 20 1665
70 % 1 20 1692
50 % 1 21 1558
40 % 1 21 1564
30 % 1 23 1428
Entity #3 | Chains: C
SNAP-25A protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 17 1383
95 % 1 17 1858 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.1
PDBFlex
90 % 1 18 1756
70 % 1 18 1765
50 % 1 19 1728
40 % 1 19 1741
30 % 1 19 1702
Entity #4 | Chains: D
SNAP-25A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 15 1680
95 % 1 16 2087 Flexibility: Low
Max RMSD: 17.3, Avg RMSD: 2.1
PDBFlex
90 % 1 16 2139
70 % 1 17 1818
50 % 1 19 1604
40 % 1 21 1381
30 % 1 22 1338

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures