Sequence Similarity Clusters for the Entities in PDB 1N7S

Entity #1 | Chains: A
vesicle-associated membrane protein 2 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 12 3749
95 % 1 12 4538
90 % 1 12 4558
70 % 1 12 4470
50 % 1 12 4294
40 % 1 12 4099
30 % 2 14 2994
Entity #2 | Chains: B
Syntaxin 1A protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 20 1173
95 % 1 20 1580 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 1.3
PDBFlex
90 % 1 20 1608
70 % 1 20 1621
50 % 1 21 1505
40 % 1 21 1519
30 % 1 23 1381
Entity #3 | Chains: C
SNAP-25A protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 17 1322
95 % 1 17 1765 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.1
PDBFlex
90 % 1 18 1672
70 % 1 18 1690
50 % 1 19 1654
40 % 1 19 1671
30 % 1 19 1637
Entity #4 | Chains: D
SNAP-25A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 15 1617
95 % 1 16 2000 Flexibility: Low
Max RMSD: 17.3, Avg RMSD: 2.1
PDBFlex
90 % 1 16 2049
70 % 1 17 1734
50 % 1 19 1543
40 % 1 21 1341
30 % 1 22 1293

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.