Sequence Similarity Clusters for the Entities in PDB 1N7S

Entity #1 | Chains: A
vesicle-associated membrane protein 2 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 12 3849
95 % 1 12 4644
90 % 1 12 4665
70 % 1 12 4572
50 % 1 12 4384
40 % 1 12 4181
30 % 2 14 3064
Entity #2 | Chains: B
Syntaxin 1A protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 20 1208
95 % 1 20 1617 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 1.3
PDBFlex
90 % 1 20 1650
70 % 1 20 1668
50 % 1 21 1538
40 % 1 21 1553
30 % 1 23 1410
Entity #3 | Chains: C
SNAP-25A protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 17 1358
95 % 1 17 1812 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.1
PDBFlex
90 % 1 18 1721
70 % 1 18 1736
50 % 1 19 1703
40 % 1 19 1721
30 % 1 19 1684
Entity #4 | Chains: D
SNAP-25A protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 15 1661
95 % 1 16 2062 Flexibility: Low
Max RMSD: 17.3, Avg RMSD: 2.1
PDBFlex
90 % 1 16 2113
70 % 1 17 1783
50 % 1 19 1578
40 % 1 21 1367
30 % 1 22 1324

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures