Sequence Similarity Clusters for the Entities in PDB 1N7F

Entity #1 | Chains: A,B
AMPA receptor interacting protein GRIP protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29117
95 % 2 2 25443 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 2 2 24563
70 % 2 2 22268
50 % 2 2 19118
40 % 2 2 16882
30 % 115 324 114
Entity #2 | Chains: C,D
8-mer peptide from interacting protein (liprin) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures