Sequence Similarity Clusters for the Entities in PDB 1N73

Entity #1 | Chains: A,D
Fibrin alpha-1 chain protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 14382
95 % 2 2 13629 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 2 2 13404
70 % 2 2 12584
50 % 2 2 11215
40 % 2 2 10156
30 % 2 2 8846
Entity #2 | Chains: B,E
Fibrin beta chain protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 12597
95 % 2 2 12257 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 2 2 12084
70 % 2 2 11410
50 % 23 30 848
40 % 23 30 888
30 % 45 61 424
Entity #3 | Chains: C,F
Fibrin gamma chain protein, length: 330 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36824
95 % 2 2 12209 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.5
PDBFlex
90 % 2 2 12042
70 % 2 2 11375
50 % 23 31 822
40 % 23 31 861
30 % 46 61 424
Entity #4 | Chains: G,H,I,J
peptide ligand: Gly-his-Arg-Pro-amide protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures