Sequence Similarity Clusters for the Entities in PDB 1N73

Entity #1 | Chains: A,D
Fibrin alpha-1 chain protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 13828
95 % 2 2 13148 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 2 2 12928
70 % 2 2 12162
50 % 2 2 10848
40 % 2 2 9838
30 % 2 2 8571
Entity #2 | Chains: B,E
Fibrin beta chain protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 12109
95 % 2 2 11816 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 2 2 11649
70 % 2 2 11013
50 % 23 30 827
40 % 23 30 863
30 % 45 61 399
Entity #3 | Chains: C,F
Fibrin gamma chain protein, length: 330 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35541
95 % 2 2 11772 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.5
PDBFlex
90 % 2 2 11611
70 % 2 2 10982
50 % 23 31 799
40 % 23 31 837
30 % 46 61 399
Entity #4 | Chains: G,H,I,J
peptide ligand: Gly-his-Arg-Pro-amide protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.