Sequence Similarity Clusters for the Entities in PDB 1N73

Entity #1 | Chains: A,D
Fibrin alpha-1 chain protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 14141
95 % 2 2 13411 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 2 2 13192
70 % 2 2 12405
50 % 2 2 11060
40 % 2 2 10021
30 % 2 2 8729
Entity #2 | Chains: B,E
Fibrin beta chain protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 12386
95 % 2 2 12062 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 2 2 11893
70 % 2 2 11241
50 % 23 30 839
40 % 23 30 879
30 % 45 61 422
Entity #3 | Chains: C,F
Fibrin gamma chain protein, length: 330 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36328
95 % 2 2 12016 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.5
PDBFlex
90 % 2 2 11853
70 % 2 2 11208
50 % 23 31 808
40 % 23 31 849
30 % 46 61 422
Entity #4 | Chains: G,H,I,J
peptide ligand: Gly-his-Arg-Pro-amide protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures