Sequence Similarity Clusters for the Entities in PDB 1N6Q

Entity #1 | Chains: T
5'-D(*AP*T*GP*CP*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3' dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*AP*(ATM))-3' dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Reverse Transcriptase protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 6625
95 % 197 236 106 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 197 236 110
70 % 197 236 126
50 % 198 237 152
40 % 198 237 169
30 % 198 237 184
Entity #4 | Chains: B
Reverse Transcriptase protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 74 93 216
95 % 192 230 114 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.6
PDBFlex
90 % 192 230 118
70 % 192 230 138
50 % 193 231 162
40 % 193 231 178
30 % 193 231 192
Entity #5 | Chains: L
Monoclonal Antibody (Light Chain) protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 14783
95 % 44 52 538 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 53 66 367
70 % 1558 1822 2
50 % 3798 4489 1
40 % 3798 4489 1
30 % 4495 5290 1
Entity #6 | Chains: H
Monoclonal Antibody (Heavy Chain) protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 14673
95 % 2 8 8900 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 2 8 8819
70 % 1836 2172 1
50 % 3799 4489 1
40 % 3799 4489 1
30 % 4496 5290 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.