Sequence Similarity Clusters for the Entities in PDB 1N6Q

Entity #1 | Chains: T
5'-D(*AP*T*GP*CP*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3' dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*AP*(ATM))-3' dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Reverse Transcriptase protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 6 6513
95 % 197 236 104
90 % 197 236 108
70 % 197 236 123
50 % 198 237 149
40 % 198 237 166
30 % 198 237 183
Entity #4 | Chains: B
Reverse Transcriptase protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 93 212
95 % 192 230 111
90 % 192 230 116
70 % 192 230 136
50 % 193 231 160
40 % 193 231 177
30 % 193 231 192
Entity #5 | Chains: L
Monoclonal Antibody (Light Chain) protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 14541
95 % 43 51 559
90 % 52 65 369
70 % 1524 1775 2
50 % 3720 4367 1
40 % 3720 4367 1
30 % 4405 5151 1
Entity #6 | Chains: H
Monoclonal Antibody (Heavy Chain) protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 14439
95 % 2 8 8753
90 % 2 8 8672
70 % 1797 2111 1
50 % 3721 4367 1
40 % 3721 4367 1
30 % 4406 5151 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.