Sequence Similarity Clusters for the Entities in PDB 1N6Q

Entity #1 | Chains: T
5'-D(*AP*T*GP*CP*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3' dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*AP*(ATM))-3' dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Reverse Transcriptase protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 6860
95 % 209 248 88 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 4.0
PDBFlex
90 % 209 248 93
70 % 209 248 111
50 % 210 249 147
40 % 210 249 162
30 % 210 249 179
Entity #4 | Chains: B
Reverse Transcriptase protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 86 105 198
95 % 204 242 112 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.6
PDBFlex
90 % 204 242 116
70 % 204 242 131
50 % 205 243 154
40 % 205 243 172
30 % 205 243 187
Entity #5 | Chains: L
Monoclonal Antibody (Light Chain) protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 15250
95 % 45 53 563
90 % 54 67 370
70 % 1919 2287 1
50 % 3894 4633 1
40 % 3894 4633 1
30 % 4616 5461 1
Entity #6 | Chains: H
Monoclonal Antibody (Heavy Chain) protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 15139
95 % 2 8 9175
90 % 2 8 9089
70 % 1884 2244 2
50 % 3895 4633 1
40 % 3895 4633 1
30 % 4617 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.