Sequence Similarity Clusters for the Entities in PDB 1N6Q

Entity #1 | Chains: T
5'-D(*AP*T*GP*CP*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3' dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*AP*(ATM))-3' dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Reverse Transcriptase protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 82 107 254
95 % 218 258 114 Flexibility: Medium
Max RMSD: 23.5, Avg RMSD: 3.9
PDBFlex
90 % 218 258 119
70 % 218 258 132
50 % 219 259 161
40 % 220 260 172
30 % 220 260 190
Entity #4 | Chains: B
Reverse Transcriptase protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 93 118 219
95 % 213 252 120 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.5
PDBFlex
90 % 213 252 123
70 % 213 252 140
50 % 215 254 169
40 % 215 254 182
30 % 215 254 201
Entity #5 | Chains: L
Monoclonal Antibody (Light Chain) protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 15916
95 % 46 54 583 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 55 68 401
70 % 2104 2538 1
50 % 4279 5152 1
40 % 4807 5806 1
30 % 6011 7240 1
Entity #6 | Chains: H
Monoclonal Antibody (Heavy Chain) protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 15917
95 % 2 8 9160 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 2 8 9064
70 % 2072 2497 2
50 % 4280 5152 1
40 % 4808 5806 1
30 % 6012 7240 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures