Sequence Similarity Clusters for the Entities in PDB 1N6Q

Entity #1 | Chains: T
5'-D(*AP*T*GP*CP*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3' dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*AP*(ATM))-3' dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Reverse Transcriptase protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 6960
95 % 209 248 94 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 209 248 99
70 % 209 248 117
50 % 210 249 151
40 % 210 249 166
30 % 210 249 180
Entity #4 | Chains: B
Reverse Transcriptase protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 105 204
95 % 204 242 118
90 % 204 242 123
70 % 204 242 139
50 % 205 243 158
40 % 205 243 175
30 % 205 243 187
Entity #5 | Chains: L
Monoclonal Antibody (Light Chain) protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 15461
95 % 46 54 563
90 % 55 68 374
70 % 1980 2362 1
50 % 4014 4781 1
40 % 4014 4781 1
30 % 4760 5635 1
Entity #6 | Chains: H
Monoclonal Antibody (Heavy Chain) protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 15352
95 % 2 8 9294 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 2 8 9198
70 % 1937 2311 2
50 % 4015 4781 1
40 % 4015 4781 1
30 % 4761 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures