Sequence Similarity Clusters for the Entities in PDB 1N6J

Entity #1 | Chains: C
5'-D(*AP*GP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*GP*C)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(*GP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*CP*T)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
Myocyte-specific enhancer factor 2B protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 13275
95 % 1 2 12605
90 % 1 2 12402
70 % 3 8 1897
50 % 3 8 1902
40 % 3 8 1906
30 % 3 8 1838
Entity #4 | Chains: G
Calcineurin-binding protein Cabin 1 protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70727
95 % 1 1 49237
90 % 1 1 46799
70 % 1 1 41167
50 % 1 1 35244
40 % 1 1 31081
30 % 1 1 26329

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.