Sequence Similarity Clusters for the Entities in PDB 1N6J

Entity #1 | Chains: C
5'-D(*AP*GP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*GP*C)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(*GP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*CP*T)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
Myocyte-specific enhancer factor 2B protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 14058
95 % 1 2 13333 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 1 2 13112
70 % 3 8 1994
50 % 3 8 2000
40 % 3 8 1991
30 % 3 8 1924
Entity #4 | Chains: G
Calcineurin-binding protein Cabin 1 protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74170
95 % 1 1 51709
90 % 1 1 49063
70 % 1 1 42963
50 % 1 1 36648
40 % 1 1 32294
30 % 1 1 27363

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.