Sequence Similarity Clusters for the Entities in PDB 1N6J

Entity #1 | Chains: C
5'-D(*AP*GP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*GP*C)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(*GP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*CP*T)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
Myocyte-specific enhancer factor 2B protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 5618
95 % 2 3 6257 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 5 11 1249
70 % 5 11 1281
50 % 5 11 1340
40 % 5 11 1350
30 % 5 11 1325
Entity #4 | Chains: G
Calcineurin-binding protein Cabin 1 protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75541
95 % 1 1 52569
90 % 1 1 49833
70 % 1 1 43606
50 % 1 1 37175
40 % 1 1 32744
30 % 1 1 27732

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures