Sequence Similarity Clusters for the Entities in PDB 1N63

Entity #1 | Chains: A,D
Carbon monoxide dehydrogenase small chain protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6065
95 % 3 6 6262 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 3 6 6254
70 % 3 6 6095
50 % 3 9 3891
40 % 3 14 2400
30 % 3 23 1291
Entity #2 | Chains: B,E
Carbon monoxide dehydrogenase large chain protein, length: 809 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6066
95 % 3 6 6263 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 3 6 6255
70 % 3 6 5508
50 % 3 8 4169
40 % 3 8 3947
30 % 3 12 2513
Entity #3 | Chains: C,F
Carbon monoxide dehydrogenase medium chain protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6112
95 % 3 6 6287 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 6 6279
70 % 3 6 6121
50 % 3 8 4170
40 % 3 9 3692
30 % 3 12 2555

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1N62 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
2 1N60 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
3 1N63 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
4 1N61 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
5 1N5W 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
6 1ZXI 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details