Sequence Similarity Clusters for the Entities in PDB 1N63

Entity #1 | Chains: A,D
Carbon monoxide dehydrogenase small chain protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 5303
95 % 3 6 5986 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 3 6 5983
70 % 3 6 5836
50 % 3 9 3691
40 % 3 13 2385
30 % 3 13 2277
Entity #2 | Chains: B,E
Carbon monoxide dehydrogenase large chain protein, length: 809 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 5951
95 % 3 6 5294 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 3 6 5319
70 % 3 6 5235
50 % 3 8 3757
40 % 3 8 3617
30 % 3 12 2446
Entity #3 | Chains: C,F
Carbon monoxide dehydrogenase medium chain protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 6314
95 % 3 6 5680 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 6 5695
70 % 3 6 5594
50 % 3 8 3929
40 % 3 9 3509
30 % 3 10 2947

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1N62 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.7.4 | Details
2 1N60 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.7.4 | Details
3 1N63 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.7.4 | Details
4 1N61 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.7.4 | Details
5 1N5W 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.7.4 | Details
6 1ZXI 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.7.4 | Details
7 4ZOH 2 B Putative oxidoreductase FAD-binding subunit 111955
8 1FFV 3 C, F CUTM, FLAVOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE 47421 1.2.7.4 | Details
9 1FFU 3 C, F CUTM, FLAVOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE 47421 1.2.7.4 | Details