Sequence Similarity Clusters for the Entities in PDB 1N63

Entity #1 | Chains: A,D
Carbon monoxide dehydrogenase small chain protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6249
95 % 3 6 6447 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 3 6 6426
70 % 3 6 6258
50 % 3 9 3984
40 % 3 14 2453
30 % 3 23 1326
Entity #2 | Chains: B,E
Carbon monoxide dehydrogenase large chain protein, length: 809 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6250
95 % 3 6 6448 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 3 6 6427
70 % 3 6 5652
50 % 3 8 4274
40 % 3 8 4048
30 % 3 12 2578
Entity #3 | Chains: C,F
Carbon monoxide dehydrogenase medium chain protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6296
95 % 3 6 6472 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 6 6451
70 % 3 6 6284
50 % 3 8 4275
40 % 3 9 3782
30 % 3 12 2620

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1N62 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
2 1N60 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
3 1N63 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
4 1N61 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
5 1N5W 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
6 1RM6 2 B, E 4-hydroxybenzoyl-CoA reductase beta subunit 59405 1.3.7.9 | Details
7 1ZXI 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
8 1T3Q 3 C, F quinoline 2-oxidoreductase medium subunit 303 1.3.99.17 | Details
9 1SB3 2 B, E 4-hydroxybenzoyl-CoA reductase beta subunit 59405 1.3.7.9 | Details
10 4ZOH 2 B Putative oxidoreductase FAD-binding subunit 111955
11 1FFV 3 C, F CUTM, FLAVOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE 47421 1.2.5.3 | Details
12 1FFU 3 C, F CUTM, FLAVOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE 47421 1.2.5.3 | Details