Sequence Similarity Clusters for the Entities in PDB 1N63

Entity #1 | Chains: A,D
Carbon monoxide dehydrogenase small chain protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6391
95 % 3 6 6587 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 3 6 6564
70 % 3 6 6373
50 % 3 9 4045
40 % 3 14 2495
30 % 3 23 1353
Entity #2 | Chains: B,E
Carbon monoxide dehydrogenase large chain protein, length: 809 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6392
95 % 3 6 6588 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 3 6 6565
70 % 3 6 5758
50 % 3 8 4347
40 % 3 8 4115
30 % 3 12 2624
Entity #3 | Chains: C,F
Carbon monoxide dehydrogenase medium chain protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6439
95 % 3 6 6613 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 6 6590
70 % 3 6 6400
50 % 3 8 4348
40 % 3 9 3839
30 % 3 12 2670

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1N62 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
2 1N60 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
3 1N63 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
4 1N61 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
5 1N5W 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
6 1ZXI 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details